Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30530
(798 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 165 9e-42
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 160 2e-40
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 86 5e-18
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 53 4e-08
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.19
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 29 0.77
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 27 3.1
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom... 27 4.1
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.4
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 5.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 5.4
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 7.2
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 7.2
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 25 9.5
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 25 9.5
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 25 9.5
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 165 bits (400), Expect = 9e-42
Identities = 82/144 (56%), Positives = 101/144 (70%), Gaps = 1/144 (0%)
Frame = +3
Query: 255 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQM 434
RF G+LNVDL EFQTNLVPYPRIHFPLVTY+P++SA KA+HE SV EITN CFEP NQM
Sbjct: 247 RFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQM 306
Query: 435 VKCDPRHGKYMACCMLYRGDVVPKE*TRPSLPSKPSVLSNSSTGVQPV-FKVGINYQPTN 611
VKCDPR G+YMA C+LYRGDV+P++ + ++ S S + P FK+GI Y+P
Sbjct: 307 VKCDPRTGRYMATCLLYRGDVIPRD-VQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQ 365
Query: 612 VVPGGDLGQRFKRCRSCMFVQTTT 683
VPG + + R CM TT+
Sbjct: 366 HVPGSGIA-KVNRA-VCMLSNTTS 387
Score = 154 bits (373), Expect = 2e-38
Identities = 68/85 (80%), Positives = 79/85 (92%)
Frame = +1
Query: 1 SVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL 180
+++YGKKS L+F++YPAPQVST+VVEPYNS+LTTH TL++SDC FMVDNEA YDICRRNL
Sbjct: 162 NMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNL 221
Query: 181 DIERPTYTNLNRLIGQIVSSITASL 255
DIERPTY NLNRLI Q+VSSITASL
Sbjct: 222 DIERPTYENLNRLIAQVVSSITASL 246
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 160 bits (388), Expect = 2e-40
Identities = 77/143 (53%), Positives = 95/143 (66%)
Frame = +3
Query: 255 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQM 434
RF+G+LNVDL EFQTNLVPYPRIHFPLVTYAP++SA KA+HE SV EITN CFEP NQM
Sbjct: 243 RFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQM 302
Query: 435 VKCDPRHGKYMACCMLYRGDVVPKE*TRPSLPSKPSVLSNSSTGVQPVFKVGINYQPTNV 614
VKCDPR G+YMA C+LYRGDV+P++ K FK+GI +P
Sbjct: 303 VKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQH 362
Query: 615 VPGGDLGQRFKRCRSCMFVQTTT 683
+ G ++ + + CM TT+
Sbjct: 363 IEGSEIAKVDRAV--CMLSNTTS 383
Score = 147 bits (356), Expect = 2e-36
Identities = 65/85 (76%), Positives = 78/85 (91%)
Frame = +1
Query: 1 SVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL 180
+++Y KKSKL+F++YPAPQVST+VVEPYNS+LTTH TL+ +DC FMVDNE+ YDICRRNL
Sbjct: 158 AMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNL 217
Query: 181 DIERPTYTNLNRLIGQIVSSITASL 255
DIERP+Y NLNRLI Q+VSSITASL
Sbjct: 218 DIERPSYENLNRLIAQVVSSITASL 242
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 86.2 bits (204), Expect = 5e-18
Identities = 38/86 (44%), Positives = 54/86 (62%)
Frame = +3
Query: 252 FRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQ 431
FRF G LN DL + N+VP+PR+HF +V +AP+ + + + +SV E+T F+ N
Sbjct: 240 FRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNM 299
Query: 432 MVKCDPRHGKYMACCMLYRGDVVPKE 509
MV DPRHG+Y+ L+RG V KE
Sbjct: 300 MVAADPRHGRYLTVAALFRGKVSMKE 325
Score = 73.7 bits (173), Expect = 3e-14
Identities = 32/82 (39%), Positives = 51/82 (62%)
Frame = +1
Query: 7 DYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 186
+Y + F++ PAP+ S VVEPYN+ L+ H +E+SD F +DNEA+ I L I
Sbjct: 158 EYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKI 217
Query: 187 ERPTYTNLNRLIGQIVSSITAS 252
+ P+Y +LN L+ +++ +T S
Sbjct: 218 KSPSYDDLNHLVSAVMAGVTTS 239
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 53.2 bits (122), Expect = 4e-08
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +1
Query: 10 YGKKSKLEFAIYPAPQ-VSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 186
Y KK ++++P Q VS VV+PYNS+L ++D ++DN A+ I L
Sbjct: 161 YPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHT 220
Query: 187 ERPTYTNLNRLIGQIVSSITASL 255
+ PT+ N+L+ ++S+ T +L
Sbjct: 221 QNPTFHQQNQLVSTVMSASTTTL 243
Score = 45.2 bits (102), Expect = 1e-05
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
Frame = +3
Query: 192 PNLHQPESSHRTDCLLDHCFFRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS---A 362
P HQ T R+ G +N DL +L+P PR HF L +Y P +
Sbjct: 223 PTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVE 282
Query: 363 EKAYHEQLSVAEITNACFEPANQMVKCDP-RHGKYMACCMLYRGDVVPKE 509
E + +V ++ P NQMV +P + +++ + +G+ P +
Sbjct: 283 EAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPAD 332
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.1 bits (67), Expect = 0.19
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = +1
Query: 286 PSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMAST 465
P+++ P S + T +SS+P P N+ PSP S + AS+ P R T V S
Sbjct: 1232 PTAKAPPVPAPSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR----TSVSRSK 1286
Query: 466 WLAVCCTVVTSYPRSERG--HRYHQNQAY 546
A TS +S + H +H N+ +
Sbjct: 1287 SKAERHETSTSSRKSSKSGEHHHHHNEGH 1315
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 29.1 bits (62), Expect = 0.77
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = -2
Query: 512 SLLGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGKLFMVGLLGRDDWRVRDQ 333
SLLGY ++ A++V+A + V HL+ G D + K G D R Q
Sbjct: 412 SLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK-------GLDMLVDRVQ 464
Query: 332 WEVDTGVR 309
+E++ G++
Sbjct: 465 YELEAGLQ 472
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 27.1 bits (57), Expect = 3.1
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +1
Query: 415 SSPPTRW*NATPVMASTWLAVCCTVVTSYPRSERGHRYH-QN-QAYYPIRRLVSNRFSRS 588
SS R P++ L++ V +Y SE+G+ H QN A P R+ S + +
Sbjct: 308 SSTNLRQDGVPPILRFNSLSINTNVARNYLSSEKGYSAHTQNSSAQSPHPRVFS--ANSA 365
Query: 589 VSTTSQPTWCPEAT 630
STTS P P +
Sbjct: 366 FSTTSPPPLTPSTS 379
>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 709 SAFDQQSFGTFIVTAKAVXFRGNWVTFRVE 798
SAF FG FI+ V R WV FR+E
Sbjct: 320 SAFFTTDFGIFIMQFLEVFRRCVWVFFRIE 349
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 26.2 bits (55), Expect = 5.4
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +1
Query: 235 SSITASLDSTAL*MWTSPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHA 414
SS ASL+ + SPS LT L S++ S + + + R+ T +S SP+ Q+
Sbjct: 605 SSPNASLEQCFV--QRSPSKMLT-TLRNNSSTFPSLRKNAMIARKSTADSLSSPKRQSVP 661
Query: 415 SSP 423
S+P
Sbjct: 662 STP 664
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 349 QSSLPRRPTMNSFPSPRSQTHASSPPTR 432
+ SLPRRP+ +P S T ++ PP +
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 5.4
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = +1
Query: 280 TSPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTM--NSFPSPRSQTHASSPPTRW*NATPV 453
TS S L+ + +++ T S+ P PT+ S +P + T+ ++ + +TPV
Sbjct: 381 TSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPV 440
Query: 454 MASTWLAVCCTVVTSYP 504
++ CT TS P
Sbjct: 441 TSTPLATTNCTTSTSVP 457
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 504 WVRRHHGTAYSKPCTCHDGG 445
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = +1
Query: 310 LTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMAS 462
LTP + S +S + +S +R ++N+ PS + +H+SS T + PV+++
Sbjct: 130 LTPKNPSLFSSSNAAS--QRGSLNTAPSNFAYSHSSSLQTSASSRPPVLSN 178
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.4 bits (53), Expect = 9.5
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +1
Query: 634 AKGSNVAV--LACLSKQQRAIGRK--LWGSAFDQQSFGTFIVTAKAVXF 768
AKGSNV V ++CL QQ GR+ L S SF + +AK+ F
Sbjct: 946 AKGSNVNVSQISCLLGQQELEGRRVPLMVSGKSLPSFVPYETSAKSGGF 994
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 241 ITASLDSTAL*MWTSPSSRLTWCLTPVSTSHWSRTRQSSLPRRP 372
+TA+ DS L + SR T CLTPV H+ + + + P
Sbjct: 199 VTAANDSKILEWDLNNFSRDTRCLTPVKDFHYDDSPVNDVEYHP 242
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 531 SKPSVLSNSSTGVQPVFKVGINYQPTNVVPGGDL 632
S+PS +SNSS P+ + P N G ++
Sbjct: 123 SRPSSISNSSESPAPINSATASMSPANNTSGNNI 156
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,526,738
Number of Sequences: 5004
Number of extensions: 79550
Number of successful extensions: 266
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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