Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30530
(798 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 187 9e-48
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 187 9e-48
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 187 9e-48
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 187 9e-48
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 184 6e-47
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 184 6e-47
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 180 1e-45
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 86 3e-17
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 86 3e-17
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 85 7e-17
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 85 7e-17
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 83 2e-16
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 83 2e-16
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 83 2e-16
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 83 2e-16
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 83 2e-16
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 58 9e-09
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 57 1e-08
At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica... 31 0.89
At1g01190.1 68414.m00032 cytochrome P450, putative similar to cy... 31 0.89
At3g57510.1 68416.m06402 endo-polygalacturonase (ADPG1) identica... 30 2.0
At2g15020.1 68415.m01710 expressed protein and genefinder 28 6.2
At1g62870.1 68414.m07099 expressed protein 28 6.2
At1g17580.1 68414.m02165 myosin, putative similar to myosin GI:4... 28 6.2
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family... 28 8.3
At3g62210.1 68416.m06989 expressed protein contains Pfam profile... 28 8.3
At3g13330.1 68416.m01678 expressed protein 28 8.3
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 187 bits (455), Expect = 9e-48
Identities = 92/143 (64%), Positives = 104/143 (72%)
Frame = +3
Query: 255 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQM 434
RFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+HEQLSVAEITN+ FEPA+ M
Sbjct: 243 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMM 302
Query: 435 VKCDPRHGKYMACCMLYRGDVVPKE*TRPSLPSKPSVLSNSSTGVQPVFKVGINYQPTNV 614
KCDPRHGKYMACC++YRGDVVPK+ K FK GINYQP V
Sbjct: 303 AKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTV 362
Query: 615 VPGGDLGQRFKRCRSCMFVQTTT 683
VPGGDL + +R CM +T+
Sbjct: 363 VPGGDLA-KVQRA-VCMISNSTS 383
Score = 146 bits (354), Expect = 1e-35
Identities = 63/85 (74%), Positives = 79/85 (92%)
Frame = +1
Query: 1 SVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL 180
SVDYGKKSKL F +YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+L
Sbjct: 158 SVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSL 217
Query: 181 DIERPTYTNLNRLIGQIVSSITASL 255
+IERPTYTNLNRL+ Q++SS+TASL
Sbjct: 218 NIERPTYTNLNRLVSQVISSLTASL 242
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 187 bits (455), Expect = 9e-48
Identities = 92/143 (64%), Positives = 104/143 (72%)
Frame = +3
Query: 255 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQM 434
RFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+HEQLSVAEITN+ FEPA+ M
Sbjct: 243 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMM 302
Query: 435 VKCDPRHGKYMACCMLYRGDVVPKE*TRPSLPSKPSVLSNSSTGVQPVFKVGINYQPTNV 614
KCDPRHGKYMACC++YRGDVVPK+ K FK GINYQP V
Sbjct: 303 AKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTV 362
Query: 615 VPGGDLGQRFKRCRSCMFVQTTT 683
VPGGDL + +R CM +T+
Sbjct: 363 VPGGDLA-KVQRA-VCMISNSTS 383
Score = 146 bits (354), Expect = 1e-35
Identities = 63/85 (74%), Positives = 79/85 (92%)
Frame = +1
Query: 1 SVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL 180
SVDYGKKSKL F +YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+L
Sbjct: 158 SVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSL 217
Query: 181 DIERPTYTNLNRLIGQIVSSITASL 255
+IERPTYTNLNRL+ Q++SS+TASL
Sbjct: 218 NIERPTYTNLNRLVSQVISSLTASL 242
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 187 bits (455), Expect = 9e-48
Identities = 92/143 (64%), Positives = 104/143 (72%)
Frame = +3
Query: 255 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQM 434
RFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+HEQLSVAEITN+ FEPA+ M
Sbjct: 243 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMM 302
Query: 435 VKCDPRHGKYMACCMLYRGDVVPKE*TRPSLPSKPSVLSNSSTGVQPVFKVGINYQPTNV 614
KCDPRHGKYMACC++YRGDVVPK+ K FK GINYQP V
Sbjct: 303 AKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTV 362
Query: 615 VPGGDLGQRFKRCRSCMFVQTTT 683
VPGGDL + +R CM +T+
Sbjct: 363 VPGGDLA-KVQRA-VCMISNSTS 383
Score = 146 bits (353), Expect = 2e-35
Identities = 63/85 (74%), Positives = 78/85 (91%)
Frame = +1
Query: 1 SVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL 180
SVDYGKKSKL F +YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+L
Sbjct: 158 SVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSL 217
Query: 181 DIERPTYTNLNRLIGQIVSSITASL 255
IERPTYTNLNRL+ Q++SS+TASL
Sbjct: 218 SIERPTYTNLNRLVSQVISSLTASL 242
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 187 bits (455), Expect = 9e-48
Identities = 92/143 (64%), Positives = 104/143 (72%)
Frame = +3
Query: 255 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQM 434
RFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+HEQLSVAEITN+ FEPA+ M
Sbjct: 243 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMM 302
Query: 435 VKCDPRHGKYMACCMLYRGDVVPKE*TRPSLPSKPSVLSNSSTGVQPVFKVGINYQPTNV 614
KCDPRHGKYMACC++YRGDVVPK+ K FK GINYQP V
Sbjct: 303 AKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTV 362
Query: 615 VPGGDLGQRFKRCRSCMFVQTTT 683
VPGGDL + +R CM +T+
Sbjct: 363 VPGGDLA-KVQRA-VCMISNSTS 383
Score = 146 bits (353), Expect = 2e-35
Identities = 63/85 (74%), Positives = 78/85 (91%)
Frame = +1
Query: 1 SVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL 180
SVDYGKKSKL F +YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+L
Sbjct: 158 SVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSL 217
Query: 181 DIERPTYTNLNRLIGQIVSSITASL 255
IERPTYTNLNRL+ Q++SS+TASL
Sbjct: 218 SIERPTYTNLNRLVSQVISSLTASL 242
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 184 bits (448), Expect = 6e-47
Identities = 87/128 (67%), Positives = 95/128 (74%)
Frame = +3
Query: 255 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQM 434
RFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVISA KAYHEQLSV EITNA FEPA+ M
Sbjct: 243 RFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMM 302
Query: 435 VKCDPRHGKYMACCMLYRGDVVPKE*TRPSLPSKPSVLSNSSTGVQPVFKVGINYQPTNV 614
KCDPRHGKYMACC++YRGDVVPK+ K FK GINYQP V
Sbjct: 303 AKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTV 362
Query: 615 VPGGDLGQ 638
VPGGDL +
Sbjct: 363 VPGGDLAK 370
Score = 150 bits (363), Expect = 1e-36
Identities = 68/85 (80%), Positives = 78/85 (91%)
Frame = +1
Query: 1 SVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL 180
SVDYGKKSKL F IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+L
Sbjct: 158 SVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSL 217
Query: 181 DIERPTYTNLNRLIGQIVSSITASL 255
DIERPTYTNLNRLI QI+SS+T SL
Sbjct: 218 DIERPTYTNLNRLISQIISSLTTSL 242
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 184 bits (448), Expect = 6e-47
Identities = 87/128 (67%), Positives = 95/128 (74%)
Frame = +3
Query: 255 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQM 434
RFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVISA KAYHEQLSV EITNA FEPA+ M
Sbjct: 243 RFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMM 302
Query: 435 VKCDPRHGKYMACCMLYRGDVVPKE*TRPSLPSKPSVLSNSSTGVQPVFKVGINYQPTNV 614
KCDPRHGKYMACC++YRGDVVPK+ K FK GINYQP V
Sbjct: 303 AKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTV 362
Query: 615 VPGGDLGQ 638
VPGGDL +
Sbjct: 363 VPGGDLAK 370
Score = 150 bits (363), Expect = 1e-36
Identities = 68/85 (80%), Positives = 78/85 (91%)
Frame = +1
Query: 1 SVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL 180
SVDYGKKSKL F IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+L
Sbjct: 158 SVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSL 217
Query: 181 DIERPTYTNLNRLIGQIVSSITASL 255
DIERPTYTNLNRLI QI+SS+T SL
Sbjct: 218 DIERPTYTNLNRLISQIISSLTTSL 242
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 180 bits (438), Expect = 1e-45
Identities = 83/128 (64%), Positives = 94/128 (73%)
Frame = +3
Query: 255 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQM 434
RFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVIS+ KAYHEQ SV EIT + FEP+N M
Sbjct: 243 RFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQFSVPEITTSVFEPSNMM 302
Query: 435 VKCDPRHGKYMACCMLYRGDVVPKE*TRPSLPSKPSVLSNSSTGVQPVFKVGINYQPTNV 614
KCDPRHGKYMACC++YRGDVVPK+ K FK GINYQP +V
Sbjct: 303 AKCDPRHGKYMACCLMYRGDVVPKDVNTAVAAIKAKRTIQFVDWCPTGFKCGINYQPPSV 362
Query: 615 VPGGDLGQ 638
VPGGDL +
Sbjct: 363 VPGGDLAK 370
Score = 143 bits (346), Expect = 1e-34
Identities = 64/85 (75%), Positives = 76/85 (89%)
Frame = +1
Query: 1 SVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL 180
SVD+GKKSKL F IYP+PQVSTAVVEPYNS+L+TH+ LEH+D ++DNEAIYDICRR+L
Sbjct: 158 SVDFGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVVVLLDNEAIYDICRRSL 217
Query: 181 DIERPTYTNLNRLIGQIVSSITASL 255
DIERPTY+NLNRLI Q +SS+T SL
Sbjct: 218 DIERPTYSNLNRLISQTISSLTTSL 242
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 85.8 bits (203), Expect = 3e-17
Identities = 36/83 (43%), Positives = 57/83 (68%)
Frame = +1
Query: 7 DYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 186
+Y + L F+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R L +
Sbjct: 159 EYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL 218
Query: 187 ERPTYTNLNRLIGQIVSSITASL 255
P++ +LN LI +S +T SL
Sbjct: 219 STPSFGDLNHLISATMSGVTCSL 241
Score = 82.2 bits (194), Expect = 4e-16
Identities = 35/88 (39%), Positives = 52/88 (59%)
Frame = +3
Query: 246 CFFRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 425
C RF G LN DL + NL+P+PR+HF +V +AP+ S + L+V E+T ++
Sbjct: 239 CSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAK 298
Query: 426 NQMVKCDPRHGKYMACCMLYRGDVVPKE 509
N M DPRHG+Y+ ++RG + KE
Sbjct: 299 NMMCAADPRHGRYLTASAMFRGKMSTKE 326
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 85.8 bits (203), Expect = 3e-17
Identities = 36/83 (43%), Positives = 57/83 (68%)
Frame = +1
Query: 7 DYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 186
+Y + L F+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R L +
Sbjct: 159 EYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL 218
Query: 187 ERPTYTNLNRLIGQIVSSITASL 255
P++ +LN LI +S +T SL
Sbjct: 219 STPSFGDLNHLISATMSGVTCSL 241
Score = 82.6 bits (195), Expect = 3e-16
Identities = 35/88 (39%), Positives = 52/88 (59%)
Frame = +3
Query: 246 CFFRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 425
C RF G LN DL + NL+P+PR+HF +V +AP+ S + L+V E+T ++
Sbjct: 239 CSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDSK 298
Query: 426 NQMVKCDPRHGKYMACCMLYRGDVVPKE 509
N M DPRHG+Y+ ++RG + KE
Sbjct: 299 NMMCAADPRHGRYLTASAIFRGQMSTKE 326
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 84.6 bits (200), Expect = 7e-17
Identities = 35/83 (42%), Positives = 56/83 (67%)
Frame = +1
Query: 7 DYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 186
+Y + + F+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R L +
Sbjct: 158 EYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL 217
Query: 187 ERPTYTNLNRLIGQIVSSITASL 255
PT+ +LN LI +S +T L
Sbjct: 218 ANPTFGDLNHLISATMSGVTCCL 240
Score = 83.8 bits (198), Expect = 1e-16
Identities = 36/88 (40%), Positives = 52/88 (59%)
Frame = +3
Query: 246 CFFRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 425
C RF G LN DL + NL+P+PR+HF +V +AP+ S + LSV E+T ++
Sbjct: 238 CCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQQMWDAK 297
Query: 426 NQMVKCDPRHGKYMACCMLYRGDVVPKE 509
N M DPRHG+Y+ ++RG + KE
Sbjct: 298 NMMCAADPRHGRYLTASAVFRGKLSTKE 325
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 84.6 bits (200), Expect = 7e-17
Identities = 35/83 (42%), Positives = 56/83 (67%)
Frame = +1
Query: 7 DYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 186
+Y + + F+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R L +
Sbjct: 158 EYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL 217
Query: 187 ERPTYTNLNRLIGQIVSSITASL 255
PT+ +LN LI +S +T L
Sbjct: 218 ANPTFGDLNHLISATMSGVTCCL 240
Score = 83.8 bits (198), Expect = 1e-16
Identities = 36/88 (40%), Positives = 52/88 (59%)
Frame = +3
Query: 246 CFFRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 425
C RF G LN DL + NL+P+PR+HF +V +AP+ S + LSV E+T ++
Sbjct: 238 CCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQQMWDAK 297
Query: 426 NQMVKCDPRHGKYMACCMLYRGDVVPKE 509
N M DPRHG+Y+ ++RG + KE
Sbjct: 298 NMMCAADPRHGRYLTASAVFRGKMSTKE 325
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 83.4 bits (197), Expect = 2e-16
Identities = 35/83 (42%), Positives = 56/83 (67%)
Frame = +1
Query: 7 DYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 186
+Y + L F+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R L +
Sbjct: 158 EYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL 217
Query: 187 ERPTYTNLNRLIGQIVSSITASL 255
P++ +LN LI +S +T L
Sbjct: 218 TTPSFGDLNHLISATMSGVTCCL 240
Score = 83.4 bits (197), Expect = 2e-16
Identities = 35/88 (39%), Positives = 52/88 (59%)
Frame = +3
Query: 246 CFFRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 425
C RF G LN DL + NL+P+PR+HF +V +AP+ S + L+V E+T ++
Sbjct: 238 CCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDSK 297
Query: 426 NQMVKCDPRHGKYMACCMLYRGDVVPKE 509
N M DPRHG+Y+ ++RG + KE
Sbjct: 298 NMMCAADPRHGRYLTASAMFRGKMSTKE 325
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 83.4 bits (197), Expect = 2e-16
Identities = 35/83 (42%), Positives = 56/83 (67%)
Frame = +1
Query: 7 DYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 186
+Y + L F+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R L +
Sbjct: 158 EYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL 217
Query: 187 ERPTYTNLNRLIGQIVSSITASL 255
P++ +LN LI +S +T L
Sbjct: 218 TTPSFGDLNHLISATMSGVTCCL 240
Score = 83.4 bits (197), Expect = 2e-16
Identities = 35/88 (39%), Positives = 52/88 (59%)
Frame = +3
Query: 246 CFFRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 425
C RF G LN DL + NL+P+PR+HF +V +AP+ S + L+V E+T ++
Sbjct: 238 CCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDSK 297
Query: 426 NQMVKCDPRHGKYMACCMLYRGDVVPKE 509
N M DPRHG+Y+ ++RG + KE
Sbjct: 298 NMMCAADPRHGRYLTASAMFRGKMSTKE 325
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 83.4 bits (197), Expect = 2e-16
Identities = 35/83 (42%), Positives = 56/83 (67%)
Frame = +1
Query: 7 DYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 186
+Y + L F+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R L +
Sbjct: 158 EYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL 217
Query: 187 ERPTYTNLNRLIGQIVSSITASL 255
P++ +LN LI +S +T L
Sbjct: 218 TTPSFGDLNHLISATMSGVTCCL 240
Score = 83.0 bits (196), Expect = 2e-16
Identities = 35/88 (39%), Positives = 52/88 (59%)
Frame = +3
Query: 246 CFFRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 425
C RF G LN DL + NL+P+PR+HF +V +AP+ S + L+V E+T ++
Sbjct: 238 CCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAK 297
Query: 426 NQMVKCDPRHGKYMACCMLYRGDVVPKE 509
N M DPRHG+Y+ ++RG + KE
Sbjct: 298 NMMCAADPRHGRYLTASAMFRGKMSTKE 325
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 83.4 bits (197), Expect = 2e-16
Identities = 35/83 (42%), Positives = 56/83 (67%)
Frame = +1
Query: 7 DYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 186
+Y + L F+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R L +
Sbjct: 158 EYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL 217
Query: 187 ERPTYTNLNRLIGQIVSSITASL 255
P++ +LN LI +S +T L
Sbjct: 218 TTPSFGDLNHLISATMSGVTCCL 240
Score = 83.0 bits (196), Expect = 2e-16
Identities = 35/88 (39%), Positives = 52/88 (59%)
Frame = +3
Query: 246 CFFRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 425
C RF G LN DL + NL+P+PR+HF +V +AP+ S + L+V E+T ++
Sbjct: 238 CCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSK 297
Query: 426 NQMVKCDPRHGKYMACCMLYRGDVVPKE 509
N M DPRHG+Y+ ++RG + KE
Sbjct: 298 NMMCAADPRHGRYLTASAMFRGKMSTKE 325
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 83.4 bits (197), Expect = 2e-16
Identities = 35/88 (39%), Positives = 52/88 (59%)
Frame = +3
Query: 246 CFFRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPA 425
C RF G LN DL + NL+P+PR+HF +V +AP+ S + L+V E+T ++
Sbjct: 238 CCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRNLTVPELTQQMWDAK 297
Query: 426 NQMVKCDPRHGKYMACCMLYRGDVVPKE 509
N M DPRHG+Y+ ++RG + KE
Sbjct: 298 NMMCAADPRHGRYLTASAMFRGKMSTKE 325
Score = 83.0 bits (196), Expect = 2e-16
Identities = 34/83 (40%), Positives = 56/83 (67%)
Frame = +1
Query: 7 DYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 186
+Y + + F+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R L +
Sbjct: 158 EYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL 217
Query: 187 ERPTYTNLNRLIGQIVSSITASL 255
P++ +LN LI +S +T L
Sbjct: 218 STPSFGDLNHLISATMSGVTCCL 240
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 57.6 bits (133), Expect = 9e-09
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +1
Query: 10 YGKKSKLEFAIYPAP-QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 186
Y KK ++++P + S VV+PYNS+LT ++DC ++DN A+ I L +
Sbjct: 161 YSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHL 220
Query: 187 ERPTYTNLNRLIGQIVSSITASL 255
PT+ N L+ ++S+ T +L
Sbjct: 221 TNPTFAQTNSLVSTVMSASTTTL 243
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Frame = +3
Query: 255 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV-ISAEKAYHEQLSVAEITNACFEPANQ 431
R+ G +N DL +L+P PR HF + Y P+ + + + +V ++ + N
Sbjct: 244 RYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNI 303
Query: 432 MVKCDPRH-----GKYMACCMLYRGDVVPKE 509
MV R+ KY++ + +G+V P +
Sbjct: 304 MVSSYARNKEASQAKYISILNIIQGEVDPTQ 334
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +1
Query: 10 YGKKSKLEFAIYPAP-QVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDI 186
Y KK ++++P + S VV+PYNS+LT ++DC ++DN A+ I L +
Sbjct: 161 YSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALGRIAVERLHL 220
Query: 187 ERPTYTNLNRLIGQIVSSITASL 255
PT+ N L+ ++S+ T +L
Sbjct: 221 TNPTFAQTNSLVSTVMSASTTTL 243
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Frame = +3
Query: 255 RFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV-ISAEKAYHEQLSVAEITNACFEPANQ 431
R+ G +N DL +L+P PR HF + Y P+ + + + +V ++ + N
Sbjct: 244 RYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNI 303
Query: 432 MVKCDPRH-----GKYMACCMLYRGDVVPKE 509
MV R+ KY++ + +G+V P +
Sbjct: 304 MVSSYARNKEASQAKYISILNIIQGEVDPTQ 334
>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to ATPase [Homo sapiens] GI:531196; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain, PF00097:
Zinc finger, C3HC4 type (RING finger)
Length = 1287
Score = 31.1 bits (67), Expect = 0.89
Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 6/126 (4%)
Frame = +1
Query: 4 VDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSD------CAFMVDNEAIYDI 165
+D+ + F P VS A V+PYNS +H D C+F DN+ ++
Sbjct: 285 IDFSSARGISFKFESNPSVSPACVKPYNS-FDSHLADSDLDRPNNYSCSFQ-DNKTVHVK 342
Query: 166 CRRNLDIERPTYTNLNRLIGQIVSSITASLDSTAL*MWTSPSSRLTWCLTPVSTSHWSRT 345
+ + E+ Y+++ G+ A L W+ SS T + +
Sbjct: 343 VKPEAESEKVVYSSVP---GEFSVRDDAYLSGETNRWWSGASSSAVSYQTDIEKGYSYMA 399
Query: 346 RQSSLP 363
Q++LP
Sbjct: 400 PQTALP 405
>At1g01190.1 68414.m00032 cytochrome P450, putative similar to
cytochrome P450 SP:O48927 from [Glycine max]
Length = 535
Score = 31.1 bits (67), Expect = 0.89
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = +3
Query: 270 LNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 410
+++D NL+P PR FPLV + S+ A+ SVAE++NA
Sbjct: 62 ISLDYNRKYKNLIPGPR-GFPLVGSMSLRSSHVAHQRIASVAEMSNA 107
>At3g57510.1 68416.m06402 endo-polygalacturonase (ADPG1) identical
to endo-polygalacturonase [Arabidopsis thaliana]
GI:2597824
Length = 431
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = -1
Query: 186 NVEITA---ADVIDGFIVDHESTVRVLKGCVGGEDRVVGLDDGSGNLR 52
NVEITA + DG + + +RV +G D + ++DG+ NL+
Sbjct: 230 NVEITAPGDSPNTDGIHITNTQNIRVSNSDIGTGDDCISIEDGTQNLQ 277
>At2g15020.1 68415.m01710 expressed protein and genefinder
Length = 526
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 264 GALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVK 440
G N+ L +F ++L+P + F T A + K Y LS+ N+ E N++VK
Sbjct: 212 GLGNLGLKQFSSSLMPRHSLGFSYATEAHGLWILKGYFPILSMNVTNNSSNEVHNKIVK 270
>At1g62870.1 68414.m07099 expressed protein
Length = 796
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +1
Query: 295 RLTWCLTPVSTSHWSRTRQSSLPRR--PTMNSFPSPRSQTHASSPP 426
R + C S S+ SRT L R P NS P P S S PP
Sbjct: 80 RCSLCDAVFSASNPSRTASEHLKRGTCPNFNSLPKPISTISPSPPP 125
>At1g17580.1 68414.m02165 myosin, putative similar to myosin GI:433663
from (Arabidopsis thaliana)
Length = 1520
Score = 28.3 bits (60), Expect = 6.2
Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +1
Query: 172 RNLDIERPTYTNLNRLIGQIVSSITASLDSTAL*MWTSPSSRLTWCLTPVSTSHWSRTRQ 351
R+ ++ER + NR+I I S+I +S L W S S+ L L T T
Sbjct: 1137 RSFEVERTSI--FNRIIETIASAIEMQENSDVLCYWLSNSATLLMFLQ--RTLKAGATGS 1192
Query: 352 SSLPRRPTMNSFPSPR-SQTHASSP 423
+ PRR M S R SQ+ SP
Sbjct: 1193 ITTPRRRGMPSSLFGRVSQSFRGSP 1217
>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
protein
Length = 421
Score = 27.9 bits (59), Expect = 8.3
Identities = 20/79 (25%), Positives = 35/79 (44%)
Frame = +1
Query: 316 PVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVT 495
P ++ H+ Q+ P + +S P+P S + +S+PP P +S V+
Sbjct: 304 PSTSPHYPSHYQNPEPYYSSPHSAPAPSSTSFSSAPP------PPPYSSNGRINIAPVLD 357
Query: 496 SYPRSERGHRYHQNQAYYP 552
P S +YH + +Y P
Sbjct: 358 PAPSS--AQKYHYDSSYQP 374
>At3g62210.1 68416.m06989 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537; expression
supported by MPSS
Length = 279
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -2
Query: 497 DVTTVQHTASHVLAMTGVAFHHLVGGLE 414
D + + H H L TG+ HH+ G++
Sbjct: 68 DTSGIPHVIQHALNSTGIELHHVPAGVK 95
>At3g13330.1 68416.m01678 expressed protein
Length = 1711
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -2
Query: 359 RDDWRVRDQWEVDTGVRHQVSLELGEVHIQSAVESKEAVIEETI 228
+D+ +W V T Q + EL ++H+QSA++ ++ + I
Sbjct: 686 KDEQVAHSRWHVPTQEETQFANELLDLHLQSALDDLLSICQSNI 729
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,368,219
Number of Sequences: 28952
Number of extensions: 460661
Number of successful extensions: 1495
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1480
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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