Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30527
(806 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 174 7e-44
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 174 7e-44
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 174 7e-44
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 174 7e-44
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 173 1e-43
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 173 1e-43
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 170 1e-42
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 110 9e-25
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 109 3e-24
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 109 3e-24
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 107 6e-24
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 107 9e-24
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 106 2e-23
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 105 3e-23
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 105 3e-23
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 102 3e-22
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 73 2e-13
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 73 3e-13
At4g38980.1 68417.m05523 expressed protein 32 0.39
At5g09370.1 68418.m01085 protease inhibitor/seed storage/lipid t... 29 3.6
At2g22410.1 68415.m02657 pentatricopeptide (PPR) repeat-containi... 29 3.6
At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica... 28 6.3
At3g49240.1 68416.m05381 pentatricopeptide (PPR) repeat-containi... 28 8.4
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 174 bits (423), Expect = 7e-44
Identities = 82/104 (78%), Positives = 90/104 (86%), Gaps = 2/104 (1%)
Frame = +1
Query: 220 FQHFLQRDRSWQHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 399
F F + +HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 49 FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 400 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGT--ALGSL 525
TIGKEIVDL LDRIRKLAD CTGLQGFL+F++ GGGT LGSL
Sbjct: 109 TIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSL 152
Score = 132 bits (318), Expect = 3e-31
Identities = 53/63 (84%), Positives = 59/63 (93%)
Frame = +2
Query: 77 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 256
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSETGAG
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 257 TYP 265
P
Sbjct: 61 HVP 63
Score = 92.7 bits (220), Expect = 3e-19
Identities = 44/69 (63%), Positives = 50/69 (72%)
Frame = +3
Query: 510 GSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXXSWVD 689
GSG SLL+ERLSVDYGKKSKL F +YP+PQVST+VVEPYNS+ +D
Sbjct: 146 GSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLD 205
Query: 690 NEAIYDICR 716
NEAIYDICR
Sbjct: 206 NEAIYDICR 214
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 174 bits (423), Expect = 7e-44
Identities = 82/104 (78%), Positives = 90/104 (86%), Gaps = 2/104 (1%)
Frame = +1
Query: 220 FQHFLQRDRSWQHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 399
F F + +HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 49 FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 400 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGT--ALGSL 525
TIGKEIVDL LDRIRKLAD CTGLQGFL+F++ GGGT LGSL
Sbjct: 109 TIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSL 152
Score = 132 bits (318), Expect = 3e-31
Identities = 53/63 (84%), Positives = 59/63 (93%)
Frame = +2
Query: 77 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 256
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSETGAG
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 257 TYP 265
P
Sbjct: 61 HVP 63
Score = 92.7 bits (220), Expect = 3e-19
Identities = 44/69 (63%), Positives = 50/69 (72%)
Frame = +3
Query: 510 GSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXXSWVD 689
GSG SLL+ERLSVDYGKKSKL F +YP+PQVST+VVEPYNS+ +D
Sbjct: 146 GSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLD 205
Query: 690 NEAIYDICR 716
NEAIYDICR
Sbjct: 206 NEAIYDICR 214
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 174 bits (423), Expect = 7e-44
Identities = 82/104 (78%), Positives = 90/104 (86%), Gaps = 2/104 (1%)
Frame = +1
Query: 220 FQHFLQRDRSWQHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 399
F F + +HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 49 FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 400 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGT--ALGSL 525
TIGKEIVDL LDRIRKLAD CTGLQGFL+F++ GGGT LGSL
Sbjct: 109 TIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSL 152
Score = 133 bits (321), Expect = 2e-31
Identities = 53/63 (84%), Positives = 60/63 (95%)
Frame = +2
Query: 77 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 256
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP+DKT+GGGDD+FNTFFSETGAG
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 257 TYP 265
P
Sbjct: 61 HVP 63
Score = 92.7 bits (220), Expect = 3e-19
Identities = 44/69 (63%), Positives = 50/69 (72%)
Frame = +3
Query: 510 GSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXXSWVD 689
GSG SLL+ERLSVDYGKKSKL F +YP+PQVST+VVEPYNS+ +D
Sbjct: 146 GSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLD 205
Query: 690 NEAIYDICR 716
NEAIYDICR
Sbjct: 206 NEAIYDICR 214
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 174 bits (423), Expect = 7e-44
Identities = 82/104 (78%), Positives = 90/104 (86%), Gaps = 2/104 (1%)
Frame = +1
Query: 220 FQHFLQRDRSWQHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 399
F F + +HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 49 FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 400 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGT--ALGSL 525
TIGKEIVDL LDRIRKLAD CTGLQGFL+F++ GGGT LGSL
Sbjct: 109 TIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSL 152
Score = 133 bits (321), Expect = 2e-31
Identities = 53/63 (84%), Positives = 60/63 (95%)
Frame = +2
Query: 77 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 256
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP+DKT+GGGDD+FNTFFSETGAG
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 257 TYP 265
P
Sbjct: 61 HVP 63
Score = 92.7 bits (220), Expect = 3e-19
Identities = 44/69 (63%), Positives = 50/69 (72%)
Frame = +3
Query: 510 GSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXXSWVD 689
GSG SLL+ERLSVDYGKKSKL F +YP+PQVST+VVEPYNS+ +D
Sbjct: 146 GSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLD 205
Query: 690 NEAIYDICR 716
NEAIYDICR
Sbjct: 206 NEAIYDICR 214
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 173 bits (421), Expect = 1e-43
Identities = 80/104 (76%), Positives = 90/104 (86%), Gaps = 2/104 (1%)
Frame = +1
Query: 220 FQHFLQRDRSWQHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 399
F F + +HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 49 FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 400 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGT--ALGSL 525
T+GKEIVDL LDR+RKLAD CTGLQGFL+F++ GGGT LGSL
Sbjct: 109 TVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSL 152
Score = 114 bits (275), Expect = 6e-26
Identities = 46/63 (73%), Positives = 54/63 (85%)
Frame = +2
Query: 77 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 256
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSETGAG
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 257 TYP 265
P
Sbjct: 61 HVP 63
Score = 94.3 bits (224), Expect = 9e-20
Identities = 46/69 (66%), Positives = 50/69 (72%)
Frame = +3
Query: 510 GSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXXSWVD 689
GSG SLL+ERLSVDYGKKSKL F IYP+PQVSTAVVEPYNS+ +D
Sbjct: 146 GSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLD 205
Query: 690 NEAIYDICR 716
NEAIYDICR
Sbjct: 206 NEAIYDICR 214
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 173 bits (421), Expect = 1e-43
Identities = 80/104 (76%), Positives = 90/104 (86%), Gaps = 2/104 (1%)
Frame = +1
Query: 220 FQHFLQRDRSWQHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 399
F F + +HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 49 FNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 400 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGT--ALGSL 525
T+GKEIVDL LDR+RKLAD CTGLQGFL+F++ GGGT LGSL
Sbjct: 109 TVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSL 152
Score = 114 bits (275), Expect = 6e-26
Identities = 46/63 (73%), Positives = 54/63 (85%)
Frame = +2
Query: 77 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 256
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSETGAG
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 257 TYP 265
P
Sbjct: 61 HVP 63
Score = 94.3 bits (224), Expect = 9e-20
Identities = 46/69 (66%), Positives = 50/69 (72%)
Frame = +3
Query: 510 GSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXXSWVD 689
GSG SLL+ERLSVDYGKKSKL F IYP+PQVSTAVVEPYNS+ +D
Sbjct: 146 GSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLD 205
Query: 690 NEAIYDICR 716
NEAIYDICR
Sbjct: 206 NEAIYDICR 214
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 170 bits (413), Expect = 1e-42
Identities = 78/104 (75%), Positives = 89/104 (85%), Gaps = 2/104 (1%)
Frame = +1
Query: 220 FQHFLQRDRSWQHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 399
F F S QHVPRAVF+DLEPTV+DEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHY
Sbjct: 49 FNTFFSETSSGQHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 400 TIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGT--ALGSL 525
T+G+EIVD L+R+RKLAD CTGLQGFL+F++ GGGT LGSL
Sbjct: 109 TVGREIVDTCLERLRKLADNCTGLQGFLVFNAVGGGTGSGLGSL 152
Score = 111 bits (266), Expect = 7e-25
Identities = 44/63 (69%), Positives = 53/63 (84%)
Frame = +2
Query: 77 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 256
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSET +G
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 257 TYP 265
P
Sbjct: 61 HVP 63
Score = 92.7 bits (220), Expect = 3e-19
Identities = 45/69 (65%), Positives = 50/69 (72%)
Frame = +3
Query: 510 GSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXXSWVD 689
GSG SLL+ERLSVD+GKKSKL F IYP+PQVSTAVVEPYNS+ +D
Sbjct: 146 GSGLGSLLLERLSVDFGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVVVLLD 205
Query: 690 NEAIYDICR 716
NEAIYDICR
Sbjct: 206 NEAIYDICR 214
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 110 bits (265), Expect = 9e-25
Identities = 47/89 (52%), Positives = 63/89 (70%)
Frame = +1
Query: 253 QHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVL 432
++VPRA+ +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D VL
Sbjct: 58 RYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVL 117
Query: 433 DRIRKLADQCTGLQGFLIFHSFGGGTALG 519
D +RK A+ C LQGF + HS GGGT G
Sbjct: 118 DVVRKEAENCDCLQGFQVCHSLGGGTGSG 146
Score = 58.8 bits (136), Expect = 4e-09
Identities = 26/68 (38%), Positives = 40/68 (58%)
Frame = +3
Query: 510 GSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXXSWVD 689
GSG +LL+ ++ +Y + L F+++P+P+VS VVEPYN+ +D
Sbjct: 144 GSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLD 203
Query: 690 NEAIYDIC 713
NEA+YDIC
Sbjct: 204 NEALYDIC 211
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +2
Query: 77 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGD---DSFNTFFSETG 247
MRE + + GQ G QIG+ WE+ C EHGI P G + +G D + N +++E
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTG-----RYVGNSDLQLERVNVYYNEAS 55
Query: 248 AGSTYP 265
G P
Sbjct: 56 CGRYVP 61
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 109 bits (261), Expect = 3e-24
Identities = 47/89 (52%), Positives = 63/89 (70%)
Frame = +1
Query: 253 QHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVL 432
++VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VL
Sbjct: 58 RYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
Query: 433 DRIRKLADQCTGLQGFLIFHSFGGGTALG 519
D +RK A+ C LQGF + HS GGGT G
Sbjct: 118 DVVRKEAENCDCLQGFQVCHSLGGGTGSG 146
Score = 58.0 bits (134), Expect = 7e-09
Identities = 25/68 (36%), Positives = 40/68 (58%)
Frame = +3
Query: 510 GSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXXSWVD 689
GSG +LL+ ++ +Y + + F+++P+P+VS VVEPYN+ +D
Sbjct: 144 GSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLD 203
Query: 690 NEAIYDIC 713
NEA+YDIC
Sbjct: 204 NEALYDIC 211
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +2
Query: 77 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 256
MRE + + GQ G QIG+ WE+ LEHGI G+ D + + N +++E G
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSEL--QLERVNVYYNEASCGR 58
Query: 257 TYP 265
P
Sbjct: 59 YVP 61
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 109 bits (261), Expect = 3e-24
Identities = 46/89 (51%), Positives = 63/89 (70%)
Frame = +1
Query: 253 QHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVL 432
++VPRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VL
Sbjct: 59 RYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVL 118
Query: 433 DRIRKLADQCTGLQGFLIFHSFGGGTALG 519
D +RK A+ C LQGF + HS GGGT G
Sbjct: 119 DVVRKEAENCDCLQGFQVCHSLGGGTGSG 147
Score = 58.8 bits (136), Expect = 4e-09
Identities = 26/68 (38%), Positives = 40/68 (58%)
Frame = +3
Query: 510 GSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXXSWVD 689
GSG +LL+ ++ +Y + L F+++P+P+VS VVEPYN+ +D
Sbjct: 145 GSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLD 204
Query: 690 NEAIYDIC 713
NEA+YDIC
Sbjct: 205 NEALYDIC 212
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/63 (36%), Positives = 33/63 (52%)
Frame = +2
Query: 77 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 256
MRE + V GQ G QIG+ WE+ C EHG+ P G+ D + + N +++E G
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGD-SADLQLERINVYYNEASGGR 59
Query: 257 TYP 265
P
Sbjct: 60 YVP 62
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 107 bits (258), Expect = 6e-24
Identities = 47/87 (54%), Positives = 61/87 (70%)
Frame = +1
Query: 259 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 438
VPRAV +DLEP +D VR+G Y Q+F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 60 VPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDV 119
Query: 439 IRKLADQCTGLQGFLIFHSFGGGTALG 519
+RK A+ C LQGF + HS GGGT G
Sbjct: 120 VRKEAENCDCLQGFQVCHSLGGGTGSG 146
Score = 58.8 bits (136), Expect = 4e-09
Identities = 26/68 (38%), Positives = 40/68 (58%)
Frame = +3
Query: 510 GSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXXSWVD 689
GSG +LL+ ++ +Y + L F+++P+P+VS VVEPYN+ +D
Sbjct: 144 GSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLD 203
Query: 690 NEAIYDIC 713
NEA+YDIC
Sbjct: 204 NEALYDIC 211
Score = 43.6 bits (98), Expect = 2e-04
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +2
Query: 77 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 256
MRE + + GQ G QIG WE+ C EHGI G+ + + + N +++E G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDL--QLERVNVYYNEASCGR 58
Query: 257 TYP 265
P
Sbjct: 59 FVP 61
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 107 bits (257), Expect = 9e-24
Identities = 45/89 (50%), Positives = 63/89 (70%)
Frame = +1
Query: 253 QHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVL 432
++VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D VL
Sbjct: 59 RYVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVL 118
Query: 433 DRIRKLADQCTGLQGFLIFHSFGGGTALG 519
D +RK A+ C LQGF + HS GGGT G
Sbjct: 119 DVVRKEAENCDCLQGFQVCHSLGGGTGSG 147
Score = 58.8 bits (136), Expect = 4e-09
Identities = 26/68 (38%), Positives = 40/68 (58%)
Frame = +3
Query: 510 GSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXXSWVD 689
GSG +LL+ ++ +Y + L F+++P+P+VS VVEPYN+ +D
Sbjct: 145 GSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLD 204
Query: 690 NEAIYDIC 713
NEA+YDIC
Sbjct: 205 NEALYDIC 212
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/63 (36%), Positives = 32/63 (50%)
Frame = +2
Query: 77 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 256
MRE + + GQ G QIG+ WE+ C EHGI G+ D T + N +++E G
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGD-TADLQLERINVYYNEASGGR 59
Query: 257 TYP 265
P
Sbjct: 60 YVP 62
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 106 bits (254), Expect = 2e-23
Identities = 45/89 (50%), Positives = 63/89 (70%)
Frame = +1
Query: 253 QHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVL 432
++VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D VL
Sbjct: 58 KYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
Query: 433 DRIRKLADQCTGLQGFLIFHSFGGGTALG 519
D +RK A+ C LQGF + HS GGGT G
Sbjct: 118 DVVRKEAENCDCLQGFQVCHSLGGGTGSG 146
Score = 58.0 bits (134), Expect = 7e-09
Identities = 25/68 (36%), Positives = 40/68 (58%)
Frame = +3
Query: 510 GSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXXSWVD 689
GSG +LL+ ++ +Y + + F+++P+P+VS VVEPYN+ +D
Sbjct: 144 GSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLD 203
Query: 690 NEAIYDIC 713
NEA+YDIC
Sbjct: 204 NEALYDIC 211
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/63 (38%), Positives = 31/63 (49%)
Frame = +2
Query: 77 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 256
MRE + + GQ G QIG WE+ C EHGI GQ D + + N +F+E G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDL--QLERINVYFNEASGGK 58
Query: 257 TYP 265
P
Sbjct: 59 YVP 61
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 105 bits (252), Expect = 3e-23
Identities = 46/87 (52%), Positives = 60/87 (68%)
Frame = +1
Query: 259 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 438
VPRAV +DLEP +D +R+G Y Q F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 60 VPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDV 119
Query: 439 IRKLADQCTGLQGFLIFHSFGGGTALG 519
+RK A+ C LQGF + HS GGGT G
Sbjct: 120 VRKEAENCDCLQGFQVCHSLGGGTGSG 146
Score = 58.8 bits (136), Expect = 4e-09
Identities = 26/68 (38%), Positives = 40/68 (58%)
Frame = +3
Query: 510 GSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXXSWVD 689
GSG +LL+ ++ +Y + L F+++P+P+VS VVEPYN+ +D
Sbjct: 144 GSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLD 203
Query: 690 NEAIYDIC 713
NEA+YDIC
Sbjct: 204 NEALYDIC 211
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/63 (36%), Positives = 32/63 (50%)
Frame = +2
Query: 77 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 256
MRE + + GQ G QIG WE+ C EHGI P G+ D + + N +++E G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDL--QLERINVYYNEASCGR 58
Query: 257 TYP 265
P
Sbjct: 59 FVP 61
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 105 bits (252), Expect = 3e-23
Identities = 46/87 (52%), Positives = 60/87 (68%)
Frame = +1
Query: 259 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR 438
VPRAV +DLEP +D +R+G Y Q F P+ + G+ A NN+A+GHYT G E++D VLD
Sbjct: 60 VPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDV 119
Query: 439 IRKLADQCTGLQGFLIFHSFGGGTALG 519
+RK A+ C LQGF + HS GGGT G
Sbjct: 120 VRKEAENCDCLQGFQVCHSLGGGTGSG 146
Score = 58.8 bits (136), Expect = 4e-09
Identities = 26/68 (38%), Positives = 40/68 (58%)
Frame = +3
Query: 510 GSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXXSWVD 689
GSG +LL+ ++ +Y + L F+++P+P+VS VVEPYN+ +D
Sbjct: 144 GSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLD 203
Query: 690 NEAIYDIC 713
NEA+YDIC
Sbjct: 204 NEALYDIC 211
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/63 (36%), Positives = 32/63 (50%)
Frame = +2
Query: 77 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 256
MRE + + GQ G QIG WE+ C EHGI P G+ D + + N +++E G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDL--QLERINVYYNEASCGR 58
Query: 257 TYP 265
P
Sbjct: 59 FVP 61
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 102 bits (244), Expect = 3e-22
Identities = 44/89 (49%), Positives = 62/89 (69%)
Frame = +1
Query: 253 QHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVL 432
++VPRAV +DLEP +D +R+G + Q+F P+ + G+ A NN+A+GHYT G E++D VL
Sbjct: 58 KYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
Query: 433 DRIRKLADQCTGLQGFLIFHSFGGGTALG 519
D +RK A+ LQGF + HS GGGT G
Sbjct: 118 DVVRKEAENSDCLQGFQVCHSLGGGTGSG 146
Score = 58.0 bits (134), Expect = 7e-09
Identities = 25/68 (36%), Positives = 40/68 (58%)
Frame = +3
Query: 510 GSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSIXXXXXXXXXXXXXSWVD 689
GSG +LL+ ++ +Y + + F+++P+P+VS VVEPYN+ +D
Sbjct: 144 GSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLD 203
Query: 690 NEAIYDIC 713
NEA+YDIC
Sbjct: 204 NEALYDIC 211
Score = 44.8 bits (101), Expect = 7e-05
Identities = 23/63 (36%), Positives = 31/63 (49%)
Frame = +2
Query: 77 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGS 256
MRE + + GQ G QIG WE+ C EHGI GQ D + + + +F+E G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPL--QLERIDVYFNEASGGK 58
Query: 257 TYP 265
P
Sbjct: 59 YVP 61
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 72.9 bits (171), Expect = 2e-13
Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Frame = +1
Query: 229 FLQRDRSWQHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYT 402
F Q D ++PRA+ +DLEP V++ ++ G YR L++ E + A NN+A G++
Sbjct: 52 FYQADDQ-HYIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASGYHQ 110
Query: 403 IGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTALGSLPY 531
GK + + ++D I + AD L+GF++ HS GGT G Y
Sbjct: 111 -GKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSY 152
Score = 47.6 bits (108), Expect = 1e-05
Identities = 25/52 (48%), Positives = 30/52 (57%)
Frame = +2
Query: 80 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFF 235
RE I++ VGQ G QIG W+ CLEHGI DG + T GG D + FF
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFF 52
Score = 36.7 bits (81), Expect = 0.018
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 510 GSGFTSLLMERLSVDYGKKSKLEFAIYP-APQVSTAVVEPYNSI 638
GSG S L+E L+ Y KK ++++P + S VV+PYNS+
Sbjct: 146 GSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSL 189
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 72.5 bits (170), Expect = 3e-13
Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Frame = +1
Query: 229 FLQRDRSWQHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYT 402
F Q D ++PRA+ +DLEP V++ ++ G YR L++ E + A NN+A G++
Sbjct: 52 FYQADDQ-HYIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASGYHQ 110
Query: 403 IGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTALGSLPY 531
GK + + ++D I + AD L+GF++ HS GGT G Y
Sbjct: 111 -GKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSY 152
Score = 47.6 bits (108), Expect = 1e-05
Identities = 25/52 (48%), Positives = 30/52 (57%)
Frame = +2
Query: 80 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFF 235
RE I++ VGQ G QIG W+ CLEHGI DG + T GG D + FF
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFF 52
Score = 36.7 bits (81), Expect = 0.018
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 510 GSGFTSLLMERLSVDYGKKSKLEFAIYP-APQVSTAVVEPYNSI 638
GSG S L+E L+ Y KK ++++P + S VV+PYNS+
Sbjct: 146 GSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSL 189
>At4g38980.1 68417.m05523 expressed protein
Length = 280
Score = 32.3 bits (70), Expect = 0.39
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Frame = -3
Query: 498 EGVEDQESLQTGTLVSELADSVQNQIY--DFLS----NXXXXXXXXXGRIFLTSNKLFWM 337
E +E+ S+ G E SV +Q++ DF+S + + +TS ++F +
Sbjct: 156 ESIEEDGSVSNGEAKEEKPASVSSQVFKDDFMSTYVEDNAEDCNVTEDPVKVTSQEIFKV 215
Query: 336 KQLSVCASAD----LINNSRFKIDEDSTGYVLPAPVSLKKVLKESS 211
L V D L+ + +DE ST LP P++ +V+ E S
Sbjct: 216 WDLEVVGDNDEEDGLVLQLKKALDESSTVQPLPQPLNDDQVVSEKS 261
>At5g09370.1 68418.m01085 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to lipid
transfer protein - Hordeum vulgare, EMBL:AF109195;
contains Pfam protease inhibitor/seed storage/LTP family
domain PF00234
Length = 158
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = -3
Query: 246 PVSLKKVLKESSPPPMVLSVGIWPSGWMPCSRQ*SSQQALPI 121
PVS L +SPP +W SGW P +PI
Sbjct: 101 PVSACDSLPPASPPTANGQAPVWGSGWAPAPSPSKGNSLIPI 142
>At2g22410.1 68415.m02657 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 681
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = -1
Query: 749 CKLGRSMSRLRPADVIDGFIVDP*KHSQMLKGCVGGEDRVVGLDDGSGNLRRGVDGELQF 570
CKL + +++ +I+G I+DP S+++ C E R + D S + +G++ F
Sbjct: 63 CKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYL---DYSVKILKGIENPNIF 119
Query: 569 RLLAVVNG 546
+ G
Sbjct: 120 SWNVTIRG 127
>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to ATPase [Homo sapiens] GI:531196; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain, PF00097:
Zinc finger, C3HC4 type (RING finger)
Length = 1287
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3
Query: 504 RYGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNS 635
R+G L + +D+ + F P VS A V+PYNS
Sbjct: 270 RHGRVDNGSLERKPPIDFSSARGISFKFESNPSVSPACVKPYNS 313
>At3g49240.1 68416.m05381 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 629
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 704 IDGFIVDP*KHSQMLKGCVGGED 636
+ GF+VDP +S ++ GCV D
Sbjct: 229 VKGFVVDPVVYSYLMMGCVKNSD 251
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,977,758
Number of Sequences: 28952
Number of extensions: 431744
Number of successful extensions: 1317
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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