Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30526
         (800 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           28   0.100
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.0  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   5.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   6.5  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   8.7  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 0.100
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
 Frame = +1

Query: 529 MRNRRRIQRKGTPS*SSTR--IRGLTRGLSANIPRCGAPGMLTSLNLPEAGLRGRPIFGT 702
           M N R     G P        +R L      N+P   AP   T++  P+A L+ RP    
Sbjct: 1   MENNRNTGNAGAPPQEMPTWFVRWLNSQQPRNVPNFAAPSTSTAVQRPQAILQVRPSTSA 60

Query: 703 FSSILEFQV 729
            + +  +QV
Sbjct: 61  AADVDGWQV 69


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
 Frame = -2

Query: 751 KPLPENAEPGIPRLTKTFQRLAFPGAQLQGG-SSLLTFQELHTGECLRKGRESDP*SLLK 575
           +P  E A+P         Q+L FPG    GG  +    Q+L     L  G   +   +L 
Sbjct: 343 QPKAEEAKPETLPFLNLQQQLPFPGYPFFGGFPNAQLLQQLIRERQLAVGGSQEESRVLD 402

Query: 574 IMK-GSPYAG 548
           + K G  Y G
Sbjct: 403 LSKPGCSYTG 412


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 102  CVSKEAGHQTSAESW 146
            C  K+ GH+ S  SW
Sbjct: 1152 CEEKKPGHKPSTSSW 1166


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
 Frame = -2

Query: 778 PMNPEKGGQKPLPENAEPG--IP-RLTKTFQR 692
           P  P   G KP+    +PG  +P + T T QR
Sbjct: 416 PSTPSADGSKPVQTTPKPGQWVPEKSTSTTQR 447


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 770 PRKRGSKTLARKCGTWNSKIDENVPKIGL 684
           P KRG+     +C T+  + D N   +G+
Sbjct: 494 PVKRGNGRCDEECNTYACEFDGNDCSLGI 522


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
 Frame = -3

Query: 216 HPDRTYEYH---HHGHAEFGRQHVQYPMIQHWFG 124
           HP  T+ YH   H+    F   H  +      FG
Sbjct: 158 HPGMTFRYHFNVHNSGTHFWHSHSGFQRSDGTFG 191


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,036
Number of Sequences: 336
Number of extensions: 4743
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)