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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30526
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   152   6e-38
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   152   6e-38
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    31   0.25 
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    27   3.1  
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    26   5.4  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    26   5.4  
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    25   9.5  
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar...    25   9.5  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   9.5  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    25   9.5  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  152 bits (368), Expect = 6e-38
 Identities = 67/81 (82%), Positives = 73/81 (90%)
 Frame = +3

Query: 15  LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 194
           LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGG
Sbjct: 24  LPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGG 83

Query: 195 THRSGQGAFGNMCRGGRMFAP 257
           THRSGQ AFGNMCR GRMFAP
Sbjct: 84  THRSGQAAFGNMCRSGRMFAP 104



 Score = 81.8 bits (193), Expect = 1e-16
 Identities = 47/129 (36%), Positives = 66/129 (51%)
 Frame = +2

Query: 254 PTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINK 433
           PTK WR+WH                          ARGH IE+IPE+PLVV D VQ   K
Sbjct: 104 PTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQK 163

Query: 434 TKQAVIFLRRLKAWSDILKVYKSQRFVLVRVKCATVVVSSVRGPLHNLQQGSGV*LAAFP 613
           TK+AV  L+ +KA+ D++KV  S++    + K         RGPL    + +G+ + AF 
Sbjct: 164 TKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGI-VKAF- 221

Query: 614 QTFPGVELL 640
           +  PGVE++
Sbjct: 222 RNIPGVEIV 230


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  152 bits (368), Expect = 6e-38
 Identities = 67/81 (82%), Positives = 73/81 (90%)
 Frame = +3

Query: 15  LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 194
           LPFVFKAPIRPDLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGG
Sbjct: 24  LPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGG 83

Query: 195 THRSGQGAFGNMCRGGRMFAP 257
           THRSGQ AFGNMCR GRMFAP
Sbjct: 84  THRSGQAAFGNMCRSGRMFAP 104



 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 47/129 (36%), Positives = 66/129 (51%)
 Frame = +2

Query: 254 PTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINK 433
           PTK WR+WH                          ARGH IE+IPE+PLVV D VQ   K
Sbjct: 104 PTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQK 163

Query: 434 TKQAVIFLRRLKAWSDILKVYKSQRFVLVRVKCATVVVSSVRGPLHNLQQGSGV*LAAFP 613
           TK+AV  L+ +KA+ D++KV  S++    + K         RGPL    + +G+ + AF 
Sbjct: 164 TKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGI-VKAF- 221

Query: 614 QTFPGVELL 640
           +  PGVE++
Sbjct: 222 RNIPGVEIV 230


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
            Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 788  VFLPNEPRKRGSKTLARKCGTWNSKIDENVPKIGL 684
            + +P  P    S  L+R+C  W  ++D NV  +GL
Sbjct: 920  LIIPVHPSTNVSGALSRQCQLWQPEVDINVVSVGL 954


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = -2

Query: 418 DFVGYNQGKLGNLFNNVSS-SLNERWDAGSSNGCRQGR--SPLSEVDATVPTPPGLRGAN 248
           DFVGY QG   + F   +S ++    D  +++G   G    P +E+       P +   N
Sbjct: 151 DFVGYEQGNSSSKFVQFTSYAIPATNDVCNASGIPLGMIVQPFAELRPDEAPVPVVDNTN 210

Query: 247 IRPPR 233
             PPR
Sbjct: 211 SNPPR 215


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 583 RIRGLTRGLSANIPRCGA 636
           R+RG   GLSA + +CGA
Sbjct: 468 RVRGTAHGLSAALGKCGA 485


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +3

Query: 147  GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPRSPGGVGTVASTSDSG 305
            G+  A A  P V+GG   R G G +G +         +SPG     +S    G
Sbjct: 1498 GSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPG 1550


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 574 SSTRIRGLTRGLSANIPRCGA 636
           S T IRG+  G++A I +CGA
Sbjct: 426 SPTAIRGVYYGIAAAIGKCGA 446


>SPCC1672.02c |sap1||switch-activating protein
           Sap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 645 VNKLEPP*SWAPGKANL-WNVFVNLGIPGSAFSG 743
           ++KLEPP ++AP   N+  N+  N+G   +A  G
Sbjct: 208 LSKLEPPSAYAPHGVNMGTNMGANMGANMNAIRG 241


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/49 (28%), Positives = 19/49 (38%)
 Frame = -1

Query: 779 PNEPRKRGSKTLARKCGTWNSKIDENVPKIGLPRSPASGRFKLVNIPGA 633
           P      G +TL      W+++      + GLP S     F  V IP A
Sbjct: 224 PRFQNTNGQRTLTVPVSVWDARQPPTSSRSGLPLSVMYNHFPSVPIPPA 272


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 583 RIRGLTRGLSANIPRCGA 636
           R+RG   G+SA + +CGA
Sbjct: 480 RVRGTAHGISAALGKCGA 497


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,464,690
Number of Sequences: 5004
Number of extensions: 75087
Number of successful extensions: 240
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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