Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30526
(800 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 152 6e-38
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 152 6e-38
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 31 0.25
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 27 3.1
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy... 26 5.4
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 5.4
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom... 25 9.5
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar... 25 9.5
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 9.5
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy... 25 9.5
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 152 bits (368), Expect = 6e-38
Identities = 67/81 (82%), Positives = 73/81 (90%)
Frame = +3
Query: 15 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 194
LPFVFKAPIRPDLV VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGG
Sbjct: 24 LPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGG 83
Query: 195 THRSGQGAFGNMCRGGRMFAP 257
THRSGQ AFGNMCR GRMFAP
Sbjct: 84 THRSGQAAFGNMCRSGRMFAP 104
Score = 81.8 bits (193), Expect = 1e-16
Identities = 47/129 (36%), Positives = 66/129 (51%)
Frame = +2
Query: 254 PTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINK 433
PTK WR+WH ARGH IE+IPE+PLVV D VQ K
Sbjct: 104 PTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQK 163
Query: 434 TKQAVIFLRRLKAWSDILKVYKSQRFVLVRVKCATVVVSSVRGPLHNLQQGSGV*LAAFP 613
TK+AV L+ +KA+ D++KV S++ + K RGPL + +G+ + AF
Sbjct: 164 TKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGI-VKAF- 221
Query: 614 QTFPGVELL 640
+ PGVE++
Sbjct: 222 RNIPGVEIV 230
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 152 bits (368), Expect = 6e-38
Identities = 67/81 (82%), Positives = 73/81 (90%)
Frame = +3
Query: 15 LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 194
LPFVFKAPIRPDLV VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGG
Sbjct: 24 LPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGG 83
Query: 195 THRSGQGAFGNMCRGGRMFAP 257
THRSGQ AFGNMCR GRMFAP
Sbjct: 84 THRSGQAAFGNMCRSGRMFAP 104
Score = 81.4 bits (192), Expect = 1e-16
Identities = 47/129 (36%), Positives = 66/129 (51%)
Frame = +2
Query: 254 PTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINK 433
PTK WR+WH ARGH IE+IPE+PLVV D VQ K
Sbjct: 104 PTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQK 163
Query: 434 TKQAVIFLRRLKAWSDILKVYKSQRFVLVRVKCATVVVSSVRGPLHNLQQGSGV*LAAFP 613
TK+AV L+ +KA+ D++KV S++ + K RGPL + +G+ + AF
Sbjct: 164 TKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGI-VKAF- 221
Query: 614 QTFPGVELL 640
+ PGVE++
Sbjct: 222 RNIPGVEIV 230
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 30.7 bits (66), Expect = 0.25
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 788 VFLPNEPRKRGSKTLARKCGTWNSKIDENVPKIGL 684
+ +P P S L+R+C W ++D NV +GL
Sbjct: 920 LIIPVHPSTNVSGALSRQCQLWQPEVDINVVSVGL 954
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 27.1 bits (57), Expect = 3.1
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -2
Query: 418 DFVGYNQGKLGNLFNNVSS-SLNERWDAGSSNGCRQGR--SPLSEVDATVPTPPGLRGAN 248
DFVGY QG + F +S ++ D +++G G P +E+ P + N
Sbjct: 151 DFVGYEQGNSSSKFVQFTSYAIPATNDVCNASGIPLGMIVQPFAELRPDEAPVPVVDNTN 210
Query: 247 IRPPR 233
PPR
Sbjct: 211 SNPPR 215
>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 583 RIRGLTRGLSANIPRCGA 636
R+RG GLSA + +CGA
Sbjct: 468 RVRGTAHGLSAALGKCGA 485
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = +3
Query: 147 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPRSPGGVGTVASTSDSG 305
G+ A A P V+GG R G G +G + +SPG +S G
Sbjct: 1498 GSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPG 1550
>SPBC1271.09 |||glycerophosphodiester
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 574 SSTRIRGLTRGLSANIPRCGA 636
S T IRG+ G++A I +CGA
Sbjct: 426 SPTAIRGVYYGIAAAIGKCGA 446
>SPCC1672.02c |sap1||switch-activating protein
Sap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 645 VNKLEPP*SWAPGKANL-WNVFVNLGIPGSAFSG 743
++KLEPP ++AP N+ N+ N+G +A G
Sbjct: 208 LSKLEPPSAYAPHGVNMGTNMGANMGANMNAIRG 241
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/49 (28%), Positives = 19/49 (38%)
Frame = -1
Query: 779 PNEPRKRGSKTLARKCGTWNSKIDENVPKIGLPRSPASGRFKLVNIPGA 633
P G +TL W+++ + GLP S F V IP A
Sbjct: 224 PRFQNTNGQRTLTVPVSVWDARQPPTSSRSGLPLSVMYNHFPSVPIPPA 272
>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 25.4 bits (53), Expect = 9.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 583 RIRGLTRGLSANIPRCGA 636
R+RG G+SA + +CGA
Sbjct: 480 RVRGTAHGISAALGKCGA 497
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,464,690
Number of Sequences: 5004
Number of extensions: 75087
Number of successful extensions: 240
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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