Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30526
         (800 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               157   1e-38
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.15 
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     33   0.20 
SB_7539| Best HMM Match : Sulfatase (HMM E-Value=3.5e-05)              31   0.82 
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   31   0.82 
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_19469| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00048)       29   3.3  
SB_54818| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            29   4.4  
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  29   4.4  
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)                    29   4.4  
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)             29   5.8  
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)                     28   7.7  
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)            28   7.7  
SB_8252| Best HMM Match : rve (HMM E-Value=0.13)                       28   7.7  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  157 bits (380), Expect = 1e-38
 Identities = 71/81 (87%), Positives = 75/81 (92%)
 Frame = +3

Query: 15  LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 194
           LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQTSAESWGTGRAVARIPRVRGGG
Sbjct: 21  LPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQTSAESWGTGRAVARIPRVRGGG 80

Query: 195 THRSGQGAFGNMCRGGRMFAP 257
           THRSGQGAFGNMCRGGRMFAP
Sbjct: 81  THRSGQGAFGNMCRGGRMFAP 101



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 41/128 (32%), Positives = 58/128 (45%)
 Frame = +2

Query: 254 PTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINK 433
           PTK WR+WH                          ARGH IEKI E+PLV++D ++ + K
Sbjct: 101 PTKTWRKWHTKVNVQQRRFAVCSALAASALPALIMARGHRIEKIAEVPLVISDAIESVTK 160

Query: 434 TKQAVIFLRRLKAWSDILKVYKSQRFVLVRVKCATVVVSSVRGPLHNLQQGSGV*LAAFP 613
           T  AV  L+ + A+ D+ K   S++    + K         +GPL       G+   AF 
Sbjct: 161 TSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVMRKGPLIIYNNDQGL-RQAF- 218

Query: 614 QTFPGVEL 637
           +  PGVEL
Sbjct: 219 RNLPGVEL 226


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 225 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 112
           Y +HP  T+ YH H      R H Q+P + H +  Q P
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTHRYQYQHP 268



 Score = 32.7 bits (71), Expect = 0.36
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 225 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQ 118
           Y +HP  T+ YHH  H +   ++ Q+P + H +  Q
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTHRYHQQ 447



 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 216 HPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQP 115
           HP  T+ YH H      R H Q+P + H +   P
Sbjct: 406 HPQVTHRYHQHPQLTH-RYHHQHPQVIHRYHQHP 438


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 240 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWF 127
           HH  CY  H    Y Y+ H H  + R H  YP  +H++
Sbjct: 20  HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHYY 54


>SB_7539| Best HMM Match : Sulfatase (HMM E-Value=3.5e-05)
          Length = 492

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -1

Query: 797 LEWVFLPNEPRKRGSKTLARKCGTWNSKIDENVPKIGLPRSPAS 666
           LE+   P +PR   S  LA + G W   +DE+ P     R PAS
Sbjct: 432 LEYRLQPEDPR---SIALAERLGRWEPWLDEDAPVTSYGRRPAS 472


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 240 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 157
           HH     RH  R + +HHH H E+ R+H
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH 351


>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 249 TYVHHDTCYRRHPDRTYEYHHHGHA 175
           TY H DT  R+HPD     H   HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147


>SB_19469| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00048)
          Length = 1347

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 793  NGCSFPMNPEKGGQKPLPENAEPGIPRLTKTFQRL 689
            NGC     P KGG  PLP N    + RL    ++L
Sbjct: 938  NGCYKTGLPWKGGHPPLPSNEAGSLQRLASLTKKL 972


>SB_54818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 580 LKIMKGSPYAGYDDGCAFYPYQHETLRLVHLK 485
           L I++G   AG+  GC    Y HE  R+ H+K
Sbjct: 58  LIILEGGKGAGFRAGCEEDTYDHEGKRMFHVK 89


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 9/35 (25%), Positives = 14/35 (40%)
 Frame = -3

Query: 252 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQY 148
           R + HH   +  H    + +HHH H      H  +
Sbjct: 209 RHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHH 243


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 129  TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 245
            T +E   +G ++ R PR  RGGG    G G  G   RGGR
Sbjct: 983  TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022


>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2325

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 48   DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARI 173
            D+ NDV ++++  +  PY +     H T  E   TG+ +A++
Sbjct: 2034 DVTNDVTINVTDVNEAPYDIRLVPSHVTVKEDIRTGQCIAQV 2075


>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
          Length = 772

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
 Frame = +3

Query: 87  SRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAF-GNMCRGGRMFAPRS 263
           SRQPY   +  GH       G G      P +RGG   + G G   G    G R  AP  
Sbjct: 110 SRQPYGPGRGRGHPNGRPMQGRGMQ----PGIRGGMMPQQGPGVRPGFPPAGSRQMAPGM 165

Query: 264 PGGV 275
             GV
Sbjct: 166 RPGV 169


>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
          Length = 193

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 240 HHDTCYRRHPDRTYEYHHH 184
           HH   YR H  + Y +HHH
Sbjct: 96  HHHQHYRHHRHQHYRHHHH 114


>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
          Length = 715

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +3

Query: 42  RPDLVNDVHVSMSKNSRQPYC-VSKEAGHQTSAESWGTGRAV 164
           RP       +SM K  R+PY  + +E GH+    S  T R V
Sbjct: 156 RPGCDTHEKISMEKRKREPYLELIRETGHERQRRSVSTERNV 197


>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
          Length = 264

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 246 YVHHDTCYRRHPDRTYEYHHHGH 178
           Y HH   +RR   R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,548,982
Number of Sequences: 59808
Number of extensions: 654448
Number of successful extensions: 1958
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1895
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)