Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30526
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   130   1e-30
Z66521-4|CAD59160.1|  150|Caenorhabditis elegans Hypothetical pr...    31   0.73 
Z66521-3|CAD59159.1|  148|Caenorhabditis elegans Hypothetical pr...    31   0.73 
Z66521-2|CAA91395.1|  312|Caenorhabditis elegans Hypothetical pr...    31   0.73 
Z72512-6|CAD44143.2|  657|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical...    29   3.9  
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U23523-7|AAC46562.2|   85|Caenorhabditis elegans Hypothetical pr...    29   5.1  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  130 bits (313), Expect = 1e-30
 Identities = 59/81 (72%), Positives = 67/81 (82%)
 Frame = +3

Query: 15  LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 194
           LP VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q SAESWGTGRAVARIPRVRGGG
Sbjct: 23  LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGG 82

Query: 195 THRSGQGAFGNMCRGGRMFAP 257
           THRSGQGAFGNMCRGG MFAP
Sbjct: 83  THRSGQGAFGNMCRGGHMFAP 103



 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 37/85 (43%), Positives = 49/85 (57%)
 Frame = +2

Query: 254 PTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINK 433
           P K +RRWH                         QARGH+I+++ E+PLVV+DKV+   K
Sbjct: 103 PLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRK 162

Query: 434 TKQAVIFLRRLKAWSDILKVYKSQR 508
           TK+AV+FLRR   W+DI KVY S+R
Sbjct: 163 TKEAVVFLRRSHLWADIEKVYNSKR 187


>Z66521-4|CAD59160.1|  150|Caenorhabditis elegans Hypothetical
           protein W02B12.3c protein.
          Length = 150

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +3

Query: 108 SKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPRSPGGVG 278
           +++A H  + +  G  R +    + RGGG  R G   FG   RGG   +  S GG G
Sbjct: 49  AEDAVHDLNGKELGGERVILDYSKPRGGGGDRGG---FGGGGRGGARVSSYSGGGGG 102


>Z66521-3|CAD59159.1|  148|Caenorhabditis elegans Hypothetical
           protein W02B12.3b protein.
          Length = 148

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +3

Query: 108 SKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPRSPGGVG 278
           +++A H  + +  G  R +    + RGGG  R G   FG   RGG   +  S GG G
Sbjct: 49  AEDAVHDLNGKELGGERVILDYSKPRGGGGDRGG---FGGGGRGGARVSSYSGGGGG 102


>Z66521-2|CAA91395.1|  312|Caenorhabditis elegans Hypothetical
           protein W02B12.3a protein.
          Length = 312

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +3

Query: 108 SKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPRSPGGVG 278
           +++A H  + +  G  R +    + RGGG  R G   FG   RGG   +  S GG G
Sbjct: 49  AEDAVHDLNGKELGGERVILDYSKPRGGGGDRGG---FGGGGRGGARVSSYSGGGGG 102


>Z72512-6|CAD44143.2|  657|Caenorhabditis elegans Hypothetical
           protein R07B5.9 protein.
          Length = 657

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +1

Query: 397 PGCSRQSPGDQQDQTGCHLPEAPQGMV*YP*GVQVSAFRAGKGKMRNRR 543
           PG S +  G +Q    C+  E+       P G + SA  +G+GK RNRR
Sbjct: 38  PGPSTKPSGKRQRGNKCNNTESEPN----PSGRKTSATSSGRGKYRNRR 82


>AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical
           protein K07H8.10 protein.
          Length = 798

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/49 (38%), Positives = 21/49 (42%)
 Frame = +3

Query: 174 PRVRGGGTHRSGQGAFGNMCRGGRMFAPRSPGGVGTVASTSDSGERPWR 320
           PR RGGG     +G F    RGG   +P   G  G      D G  PWR
Sbjct: 79  PRGRGGGFRGGDRGGFRGGDRGG---SPWRGGDRGNFRG-GDRGGSPWR 123



 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = +3

Query: 174 PRVRGGGTHRSGQGAFGNMCRGGRMFAPRSPGG 272
           PR RGGG  R G+G       GG  F PR  GG
Sbjct: 6   PRGRGGGGFRGGRG-------GGSGFTPRGGGG 31



 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
 Frame = +3

Query: 183 RGG--GTHRSGQGAFGNMCRGGRMFAPRSPGGVG 278
           RGG  G    G+G F    RGG  F+PR  G  G
Sbjct: 123 RGGDRGVANRGRGDFSGGSRGGNKFSPRGGGRGG 156


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
           protein C29A12.4 protein.
          Length = 1560

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 409 GYNQGKLGNL-FNNVSSSLNERWDAGSSNGCRQGRSPLSEVDATVPTP 269
           GY  G + N+  N VS+ + + ++A +S G   G S  +E+D   P P
Sbjct: 614 GYT-GCIKNIRMNGVSTKIGQEFEASNSTGIELGCSLSNELDICEPNP 660


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
 Frame = +3

Query: 84  NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 254
           N R    V K   H+    SW T     +  R  GGG  R   SG    G   RGGR   
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196

Query: 255 PRSP 266
              P
Sbjct: 197 APKP 200


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 240 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 157
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>U23523-7|AAC46562.2|   85|Caenorhabditis elegans Hypothetical
           protein F53A9.7 protein.
          Length = 85

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 264 GFVGRTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHW 130
           G++  T VH D  +  H D     HHH  +  G  H  +  +QH+
Sbjct: 29  GYMPPTVVHTDGGHHGHVDT----HHHEESHHGEHHGGHHGVQHY 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,743,295
Number of Sequences: 27780
Number of extensions: 463578
Number of successful extensions: 1438
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)