Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30526
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   2.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   4.4  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   4.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   4.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   4.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   5.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   7.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   7.6  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
 Frame = -2

Query: 646 TFQELHTGECLRKGRESDP*SLLKIMKGSPYAGYDDGC--AFYPYQHETLRLVHLKDIRP 473
           +FQ LH G  LR  R +   SL+++++ S    Y       + P   +  R    +   P
Sbjct: 195 SFQILHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQWEEVYIPLYQQPERHYERRATPP 254

Query: 472 CLEAPQEDDSLFGLVDLLDFVGYNQG 395
             +   +D    G  ++ D   Y  G
Sbjct: 255 QPDRTSKDQGTIGESEVFDTTRYPHG 280


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 455 LRRLKAWSDILKVYKSQRFVLVRV 526
           LR +  W+   + YK QR+  V++
Sbjct: 222 LRNIVHWTPFFQTYKKQRYPWVQL 245


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 455 LRRLKAWSDILKVYKSQRFVLVRV 526
           LR +  W+   + YK QR+  V++
Sbjct: 137 LRNIVHWTPFFQTYKKQRYPWVQL 160


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 455 LRRLKAWSDILKVYKSQRFVLVRV 526
           LR +  W+   + YK QR+  V++
Sbjct: 456 LRNIVHWTPFFQTYKKQRYPWVQL 479


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 195 YHHHGHAEFGRQHVQY 148
           +HHH H     QH+ Y
Sbjct: 351 HHHHHHQTQSLQHLHY 366


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +1

Query: 553 RKGTPS*SSTRIRGLTRGLSANIPRCGAPGMLTSLNLPEAGLRGRPIFGTFSSIL 717
           R+  P    T +  L  G+S  +    +   + +LNL   G+RG  + G   S++
Sbjct: 263 RESLPPTEKTPLISLYYGVSICLVTFASALAVVTLNLHHRGVRGTRVPGIVRSLV 317


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 207 GQGAFGNMCRGGRMFAP 257
           G G FG++CRG     P
Sbjct: 640 GGGEFGDVCRGKLKLPP 656


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 731 GTWNSKIDENVPKIGL 684
           G W + +D N+PK+ L
Sbjct: 590 GVWINCLDPNLPKLAL 605


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,668
Number of Sequences: 438
Number of extensions: 5213
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)