Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30526
         (800 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   146   1e-35
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   146   1e-35
At5g22640.1 68418.m02645 MORN (Membrane Occupation and Recogniti...    33   0.22 
At5g07730.1 68418.m00886 expressed protein                             30   2.1  
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp...    29   3.6  
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp...    29   3.6  
At3g16130.1 68416.m02037 expressed protein contains Pfam profile...    29   4.7  
At4g39480.1 68417.m05585 cytochrome P450 family protein contains...    28   6.3  
At5g51770.1 68418.m06419 protein kinase family protein contains ...    28   8.3  
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr...    28   8.3  
At5g01010.1 68418.m00001 expressed protein                             28   8.3  
At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein ...    28   8.3  
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy...    28   8.3  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  146 bits (355), Expect = 1e-35
 Identities = 65/81 (80%), Positives = 71/81 (87%)
 Frame = +3

Query: 15  LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 194
           LP V  AP+RPD+VN VH  +S NSRQPY VSK+AGHQTSAESWGTGRAV+RIPRV GGG
Sbjct: 30  LPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGG 89

Query: 195 THRSGQGAFGNMCRGGRMFAP 257
           THR+GQ AFGNMCRGGRMFAP
Sbjct: 90  THRAGQAAFGNMCRGGRMFAP 110



 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 41/128 (32%), Positives = 55/128 (42%)
 Frame = +2

Query: 254 PTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINK 433
           PTK WRRWH                          ARGH IE +PE+PLVV+D  + + K
Sbjct: 110 PTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEK 169

Query: 434 TKQAVIFLRRLKAWSDILKVYKSQRFVLVRVKCATVVVSSVRGPLHNLQQGSGV*LAAFP 613
           T  A+  L+++ A+ D  K   S      + K       S +GPL          + AF 
Sbjct: 170 TSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVFGTEGAKIVKAF- 228

Query: 614 QTFPGVEL 637
           +  PGVEL
Sbjct: 229 RNLPGVEL 236


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  146 bits (355), Expect = 1e-35
 Identities = 65/81 (80%), Positives = 71/81 (87%)
 Frame = +3

Query: 15  LPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGG 194
           LP V  AP+RPD+VN VH  +S NSRQPY VSK+AGHQTSAESWGTGRAV+RIPRV GGG
Sbjct: 29  LPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGG 88

Query: 195 THRSGQGAFGNMCRGGRMFAP 257
           THR+GQ AFGNMCRGGRMFAP
Sbjct: 89  THRAGQAAFGNMCRGGRMFAP 109



 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 43/129 (33%), Positives = 59/129 (45%), Gaps = 1/129 (0%)
 Frame = +2

Query: 254 PTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINK 433
           PTK WRRWH                          ARGH IE +PE+PLVV+D  + + K
Sbjct: 109 PTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEK 168

Query: 434 TKQAVIFLRRLKAWSDILKVYKSQRFVLVRVKCATVVVSSVRGPLHNL-QQGSGV*LAAF 610
           T  A+  L+++ A+ D  K   S      + K       S +GPL     +GS + + AF
Sbjct: 169 TSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSKI-VKAF 227

Query: 611 PQTFPGVEL 637
            +  PGVEL
Sbjct: 228 -RNLPGVEL 235


>At5g22640.1 68418.m02645 MORN (Membrane Occupation and Recognition
            Nexus) repeat-containing protein contains Pfam profile
            PF02493: MORN repeat
          Length = 871

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +1

Query: 511  RAGKGKMRNRRRIQRKGTPS*SSTRIRGLTRGLSANIPRCGA-PGMLTSLNLPEAGLRGR 687
            R   GK+ NR  +QR    S S +++  L+R LS N     + P   +S  L ++GL   
Sbjct: 784  RLKMGKVANRGCVQRSYGSSRSQSQLMSLSRLLSCNASSSSSPPDSSSSEYLKDSGLWET 843

Query: 688  PIFGTFSSILEFQV 729
            P+ G  S +L  Q+
Sbjct: 844  PV-GDMSVVLSLQI 856


>At5g07730.1 68418.m00886 expressed protein
          Length = 264

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 586 SLLKIMKGSPYAGYDDGCAFYPYQHETLRLV-HLKDIRPCLEAPQEDDS 443
           S + +++ SP    DDG  F P  HE L +   +  +   LE+P E  S
Sbjct: 21  SSMVVIRESPIFAKDDGVVFPPIYHENLHVASSVYGVDRYLESPSESSS 69


>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 844

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 252 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 133
           R++ H    + +H D +  E+HHH H    R+H     ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775


>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 843

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 252 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 133
           R++ H    + +H D +  E+HHH H    R+H     ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775


>At3g16130.1 68416.m02037 expressed protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 576

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = -1

Query: 797 LEWVFLPNEPRKRGS-KTLARKCGTW---NSKIDENVPKIGLPRSPASGRF 657
           ++W    NEPRK  S K L  +  +    N+K    +  +G  RSP +GR+
Sbjct: 525 MQWNIETNEPRKEKSDKKLLTRVSSMIMSNNKKTTYLESLGTTRSPTAGRY 575


>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 989

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 12  PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 107
           P+PF  K+P +PD++   H  +  NSR  +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414


>At5g51770.1 68418.m06419 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 654

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +3

Query: 198 HRSGQGAFGNMCRGGRMFAPRSPGG---VGTVASTSDSGERPWRQPL 329
           +R GQG FG++ RG    +P S GG   V  + S S  GER ++  L
Sbjct: 94  NRLGQGGFGSVFRG--TLSPSSGGGNVAVKVMDSGSLQGEREFQNEL 138


>At5g17650.1 68418.m02069 glycine/proline-rich protein
           glycine/proline-rich protein GPRP - Arabidopsis
           thaliana, EMBL:X84315
          Length = 173

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 240 HHDTCYRRHPDRTYEYHHHGHAEF 169
           HH   Y  H    Y Y +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145


>At5g01010.1 68418.m00001 expressed protein
          Length = 409

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = -1

Query: 137 STGLVTSLLAHAVGLPRVLGHRNVNIIDQVR-TDGRLEHEREGLG 6
           +TG+  +L+ + VG+P+VL    ++ I Q+   DG +E +RE  G
Sbjct: 203 ATGVYKTLVKYLVGVPQVL----LDFIRQINDDDGPMEEQRERYG 243


>At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein
           contains Pfam domain PF02141: DENN (AEX-3) domain
          Length = 976

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 799 FWNGCSFPMNPEKGGQKPLPENAEPGIPRLTKTFQRL 689
           ++NG   P +P +G ++   E   PG  R T +FQRL
Sbjct: 247 YFNGPVLPQSPTQGHRRTQSEIGTPG-HRRTNSFQRL 282


>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
           cytochrome P450 GI:4688670 from [Catharanthus roseus]
          Length = 497

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 12  PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 107
           PLPF  K+P +PD++   H  +  NS+   C+
Sbjct: 367 PLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,214,029
Number of Sequences: 28952
Number of extensions: 451320
Number of successful extensions: 1533
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1515
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)