Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30525
         (509 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0279 - 23794964-23795111,23795486-23795634,23796120-237962...    77   8e-15
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731...    75   3e-14
07_01_0849 + 6896930-6896996,6897453-6897474,6897615-6897690,689...    75   4e-14
07_01_1199 + 11391638-11391718,11393477-11393590,11393690-113938...    61   6e-10
01_05_0105 - 18155135-18155297,18155379-18155515,18155621-181557...    38   0.004
11_04_0091 - 13392864-13392950,13393534-13393579,13393706-133938...    27   8.8  

>05_05_0279 -
           23794964-23795111,23795486-23795634,23796120-23796221,
           23796309-23796384,23796578-23796588
          Length = 161

 Score = 77.0 bits (181), Expect = 8e-15
 Identities = 34/76 (44%), Positives = 45/76 (59%)
 Frame = +1

Query: 25  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 204
           +K  LC +SG KIYPG G   ++ D + F F NSKC+     R  P K+TWT +YR++ K
Sbjct: 3   LKTELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHK 62

Query: 205 KGQEEEQAKKRTRRTQ 252
           K    E  KKR R T+
Sbjct: 63  KDIHAEAVKKRRRTTK 78



 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/37 (51%), Positives = 22/37 (59%)
 Frame = +3

Query: 213 RGRTSKETY*KDPKFQRAIVGASLSDIMAKRNMKPEV 323
           R RT+K+ Y       R+IVGASL  I  KR  KPEV
Sbjct: 73  RRRTTKKPY------SRSIVGASLEVIQKKRAEKPEV 103


>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
            34673237-34675178,34675588-34675658,34676158-34676307,
            34676963-34677038,34677131-34677232,34677707-34677855,
            34678214-34678364
          Length = 1172

 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 33/72 (45%), Positives = 43/72 (59%)
 Frame = +1

Query: 37   LCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQE 216
            LC +SG KIYPG G   ++ D + F F NSKC+     R  P K+TWT +YR++ KK   
Sbjct: 1017 LCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIH 1076

Query: 217  EEQAKKRTRRTQ 252
             E  KKR R T+
Sbjct: 1077 AEAVKKRRRTTK 1088



 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/37 (48%), Positives = 23/37 (62%)
 Frame = +3

Query: 213  RGRTSKETY*KDPKFQRAIVGASLSDIMAKRNMKPEV 323
            R RT+K+ Y       R+IVGA+L  I  KR+ KPEV
Sbjct: 1083 RRRTTKKPY------SRSIVGATLEVIQKKRSEKPEV 1113


>07_01_0849 +
           6896930-6896996,6897453-6897474,6897615-6897690,
           6897775-6897876,6898156-6898304,6898637-6898784
          Length = 187

 Score = 74.5 bits (175), Expect = 4e-14
 Identities = 33/72 (45%), Positives = 43/72 (59%)
 Frame = +1

Query: 37  LCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQE 216
           LC +SG KIYPG G   ++ D + F F NSKC+     R  P K+TWT +YR++ KK   
Sbjct: 33  LCRFSGAKIYPGKGIRFIRADSQVFLFSNSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIH 92

Query: 217 EEQAKKRTRRTQ 252
            E  KKR R T+
Sbjct: 93  AEAVKKRRRTTK 104



 Score = 28.7 bits (61), Expect = 2.9
 Identities = 18/37 (48%), Positives = 22/37 (59%)
 Frame = +3

Query: 213 RGRTSKETY*KDPKFQRAIVGASLSDIMAKRNMKPEV 323
           R RT+K+ Y       R+IVGA+L  I  KR  KPEV
Sbjct: 99  RRRTTKKPY------SRSIVGATLEVIQKKRAEKPEV 129


>07_01_1199 +
           11391638-11391718,11393477-11393590,11393690-11393826,
           11393905-11394064
          Length = 163

 Score = 60.9 bits (141), Expect = 6e-10
 Identities = 26/56 (46%), Positives = 32/56 (57%)
 Frame = +1

Query: 25  MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYR 192
           M++  C +    +YPGHG   V+ D K F F  SKC     M+RNPRKV WT  YR
Sbjct: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYR 56


>01_05_0105 -
           18155135-18155297,18155379-18155515,18155621-18155734,
           18155768-18155806,18156838-18156993
          Length = 202

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = +1

Query: 109 FTFLNSKCEAAHLMRRNPRKVTWTVLYR 192
           F F  SKC     M+RNPRKV WT  YR
Sbjct: 67  FRFCRSKCHKNFKMKRNPRKVKWTKAYR 94


>11_04_0091 -
           13392864-13392950,13393534-13393579,13393706-13393819,
           13394135-13394256,13394360-13394431,13395663-13395812,
           13399258-13399341,13399459-13399560,13399634-13399671,
           13399762-13399864,13399978-13400389,13400493-13400671
          Length = 502

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 108 GFSIHFNHGLAMAWIYFVSTIGAKSDLHFGR 16
           GF+I + + L  A + F+   G+  + H+GR
Sbjct: 459 GFTITYANDLTFATVKFIGQGGSSGEAHYGR 489


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,769,428
Number of Sequences: 37544
Number of extensions: 223268
Number of successful extensions: 536
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)