Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30525
(509 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40) 124 6e-29
SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07) 84 7e-17
SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 81 5e-16
SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 81 5e-16
SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 81 5e-16
SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 81 5e-16
SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07) 79 3e-15
SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07) 78 5e-15
SB_12479| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 3e-05
SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_48110| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
>SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)
Length = 154
Score = 124 bits (298), Expect = 6e-29
Identities = 55/74 (74%), Positives = 61/74 (82%)
Frame = +1
Query: 25 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 204
MK+ LC YSGYKIYPGHGK V+ DGK F FLN +CE A LMRRNPR+VTWTVLYRRK K
Sbjct: 1 MKLELCNYSGYKIYPGHGKRYVRQDGKVFNFLNKRCERALLMRRNPREVTWTVLYRRKHK 60
Query: 205 KGQEEEQAKKRTRR 246
KG +EE +KKRTRR
Sbjct: 61 KGTQEEVSKKRTRR 74
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +3
Query: 201 QKGPRGRTSKETY*KDPKFQRAIVGASLSDIMAKRNMKPEV 323
+KG + SK+ ++ KFQR++ GASL +I+AKRN KPEV
Sbjct: 60 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 100
>SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07)
Length = 139
Score = 83.8 bits (198), Expect = 7e-17
Identities = 37/52 (71%), Positives = 42/52 (80%)
Frame = +1
Query: 91 KVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQAKKRTRR 246
K GK F +LN +CE A LMRRNPR+VTWTVLYRRK KKG +EE +KKRTRR
Sbjct: 38 KFQGKVFNYLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRR 89
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +3
Query: 201 QKGPRGRTSKETY*KDPKFQRAIVGASLSDIMAKRNMKPEV 323
+KG + SK+ ++ KFQR++ GASL +I+AKRN KPEV
Sbjct: 75 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 115
>SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 113
Score = 81.0 bits (191), Expect = 5e-16
Identities = 36/48 (75%), Positives = 40/48 (83%)
Frame = +1
Query: 103 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQAKKRTRR 246
K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE +KKRTRR
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRR 54
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +3
Query: 201 QKGPRGRTSKETY*KDPKFQRAIVGASLSDIMAKRNMKPEV 323
+KG + SK+ ++ KFQR++ GASL +I+AKRN KPEV
Sbjct: 40 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80
>SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 90
Score = 81.0 bits (191), Expect = 5e-16
Identities = 36/48 (75%), Positives = 40/48 (83%)
Frame = +1
Query: 103 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQAKKRTRR 246
K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE +KKRTRR
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRR 54
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +3
Query: 201 QKGPRGRTSKETY*KDPKFQRAIVGASLSDIMAKRNMKPEV 323
+KG + SK+ ++ KFQR++ GASL +I+AKRN KPEV
Sbjct: 40 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80
>SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 90
Score = 81.0 bits (191), Expect = 5e-16
Identities = 36/48 (75%), Positives = 40/48 (83%)
Frame = +1
Query: 103 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQAKKRTRR 246
K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE +KKRTRR
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRR 54
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +3
Query: 201 QKGPRGRTSKETY*KDPKFQRAIVGASLSDIMAKRNMKPEV 323
+KG + SK+ ++ KFQR++ GASL +I+AKRN KPEV
Sbjct: 40 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80
>SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 90
Score = 81.0 bits (191), Expect = 5e-16
Identities = 36/48 (75%), Positives = 40/48 (83%)
Frame = +1
Query: 103 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQAKKRTRR 246
K F FLN +CE A LMRRNPR+VTWTVLYRRK KKG +EE +KKRTRR
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRR 54
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +3
Query: 201 QKGPRGRTSKETY*KDPKFQRAIVGASLSDIMAKRNMKPEV 323
+KG + SK+ ++ KFQR++ GASL +I+AKRN KPEV
Sbjct: 40 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80
>SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07)
Length = 104
Score = 78.6 bits (185), Expect = 3e-15
Identities = 35/48 (72%), Positives = 39/48 (81%)
Frame = +1
Query: 103 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQAKKRTRR 246
K F FLN +CE A LMRRNPR+VTWTVLYRR KKG +EE +KKRTRR
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRMHKKGTQEEVSKKRTRR 54
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +3
Query: 201 QKGPRGRTSKETY*KDPKFQRAIVGASLSDIMAKRNMKPEV 323
+KG + SK+ ++ KFQR++ GASL +I+AKRN KPEV
Sbjct: 40 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80
>SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07)
Length = 90
Score = 77.8 bits (183), Expect = 5e-15
Identities = 35/48 (72%), Positives = 39/48 (81%)
Frame = +1
Query: 103 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQAKKRTRR 246
K F FLN +CE A LMRRNPR+VTWTVLYR K KKG +EE +KKRTRR
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRCKHKKGTQEEVSKKRTRR 54
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +3
Query: 201 QKGPRGRTSKETY*KDPKFQRAIVGASLSDIMAKRNMKPEV 323
+KG + SK+ ++ KFQR++ GASL +I+AKRN KPEV
Sbjct: 40 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 80
>SB_12479| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 52
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/41 (51%), Positives = 30/41 (73%)
Frame = +3
Query: 201 QKGPRGRTSKETY*KDPKFQRAIVGASLSDIMAKRNMKPEV 323
+KG + SK+ ++ KFQR++ GASL +I+AKRN KPEV
Sbjct: 2 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEV 42
>SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 27.5 bits (58), Expect = 6.8
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 148 MRRNPRKVTWTVLYRR 195
M+RNPRK+ WT +R+
Sbjct: 1 MKRNPRKMKWTKAFRK 16
>SB_48110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 130 CEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQAKKRTRRT 249
C++ RN ++V+ T+ +RRKF E + A RT
Sbjct: 39 CQSPCTRGRNRKRVSDTIYHRRKFMNTNETQSACAAFTRT 78
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,276,891
Number of Sequences: 59808
Number of extensions: 243689
Number of successful extensions: 613
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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