Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30525
         (509 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    23   4.5  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   6.0  
U50471-1|AAA93474.1|  135|Anopheles gambiae protein ( Anopheles ...    23   7.9  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   7.9  

>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
           channel alpha subunitprotein.
          Length = 2139

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 242 LVRFFACSSSWPFLNL 195
           L+R F  + SWP LNL
Sbjct: 903 LLRVFKLAKSWPTLNL 918


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +1

Query: 196 KFKKGQEEEQAK-KRTRRT 249
           K +KG EEEQAK  + RRT
Sbjct: 797 KLQKGIEEEQAKLDQVRRT 815


>U50471-1|AAA93474.1|  135|Anopheles gambiae protein ( Anopheles
           gambiae putativeribosomal protein S8 mRNA, complete cds.
           ).
          Length = 135

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 190 RRKFKKGQEEEQAKKRTR 243
           +R+ K G+E+  +KKRT+
Sbjct: 53  KRELKAGEEDVLSKKRTK 70


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 66  IYFVSTIGAKSDLHFGRHELVP 1
           IY    IGAK D +F   ++VP
Sbjct: 96  IYLRRVIGAKKDQYFLNKKVVP 117


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 446,336
Number of Sequences: 2352
Number of extensions: 7725
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 46091631
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)