Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30525
(509 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S ... 76 2e-14
At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A) 75 2e-14
At2g44860.1 68415.m05585 60S ribosomal protein L24, putative 61 5e-10
At5g09780.1 68418.m01132 transcriptional factor B3 family protei... 29 1.4
At5g12300.1 68418.m01446 C2 domain-containing protein contains P... 27 5.5
At5g13090.1 68418.m01500 expressed protein predicted proteins - ... 27 7.3
At5g11640.1 68418.m01361 expressed protein predicted proteins, D... 27 7.3
At1g30370.1 68414.m03713 lipase class 3 family protein similar t... 27 7.3
>At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S
ribosomal protein L24, Arabidopsis thaliana,
EMBL:AC006282
Length = 163
Score = 75.8 bits (178), Expect = 2e-14
Identities = 32/76 (42%), Positives = 46/76 (60%)
Frame = +1
Query: 25 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 204
+K LC +SG KIYPG G ++ D + F FLNSKC+ + P K+ WT +YR++ K
Sbjct: 3 LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHK 62
Query: 205 KGQEEEQAKKRTRRTQ 252
K +E K+R R T+
Sbjct: 63 KDAAQEAVKRRRRATK 78
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 255 FQRAIVGASLSDIMAKRNMKPEV 323
+ R+IVGA+L I KR KPEV
Sbjct: 81 YSRSIVGATLEVIQKKRAEKPEV 103
>At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)
Length = 164
Score = 75.4 bits (177), Expect = 2e-14
Identities = 32/76 (42%), Positives = 46/76 (60%)
Frame = +1
Query: 25 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 204
+K LC +SG KIYPG G ++ D + F FLNSKC+ + P K+ WT +YR++ K
Sbjct: 3 LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHK 62
Query: 205 KGQEEEQAKKRTRRTQ 252
K +E K+R R T+
Sbjct: 63 KDAAQEAVKRRRRATK 78
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 255 FQRAIVGASLSDIMAKRNMKPEV 323
+ R+IVGA+L I KR KPEV
Sbjct: 81 YSRSIVGATLEVIQKKRAEKPEV 103
>At2g44860.1 68415.m05585 60S ribosomal protein L24, putative
Length = 159
Score = 60.9 bits (141), Expect = 5e-10
Identities = 32/77 (41%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = +1
Query: 25 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYR---- 192
M++ C + IYPGHG V+ D K F F SKC M+RNPRKV WT +R
Sbjct: 1 MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60
Query: 193 RKFKKGQEEEQAKKRTR 243
+ K E KKR R
Sbjct: 61 KDMTKDTTFEFEKKRNR 77
>At5g09780.1 68418.m01132 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 308
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/27 (59%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Frame = +1
Query: 187 YRRKF---KKGQEEEQAKKRTRRTQNS 258
Y+RK KK EE Q KRT RTQNS
Sbjct: 169 YKRKLNFGKKKAEETQTYKRTERTQNS 195
>At5g12300.1 68418.m01446 C2 domain-containing protein contains Pfam
profile PF00168: C2 domain
Length = 374
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +1
Query: 73 HGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQEEEQAKKRTRRT 249
+G T T L+ + A + R++T + RR+ K+G+EEE+ K T
Sbjct: 239 YGNGSFMASSSTTTSLSDEKNTADSNEKENREIT--EVSRRRSKEGEEEEEENKMNEET 295
>At5g13090.1 68418.m01500 expressed protein predicted proteins -
Arabidopsis thaliana
Length = 269
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 179 LSCTGASSKRAKRKNKQRNVLEGPKIPTCDCWCF 280
+S G SS + K K K + K P DC CF
Sbjct: 72 ISDRGNSSSKNKTKKKSNKSSKNHKPPVFDCECF 105
>At5g11640.1 68418.m01361 expressed protein predicted proteins,
Drosophila melanogaster and Homo sapiens
Length = 253
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 275 TNNRTLEFWVLLVRFFACSSSWPFLNLRLYRTVHVTLRGFLL 150
++ T ++W L+ FFACSSS + R + + +T LL
Sbjct: 136 SDGNTTKYW--LIEFFACSSSKCVRSSRCFPELSITYSNNLL 175
>At1g30370.1 68414.m03713 lipase class 3 family protein similar to
DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
GI:16215706; contains Pfam profile: PF01764: Lipase
Length = 529
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 73 HGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRR-KFKKGQEEE 222
HGKT+VKV + NSK E + + + T + R F K + EE
Sbjct: 269 HGKTVVKVQSGFLSIYNSKSELTRYNKESASEQTMDEVKRLVNFFKDRGEE 319
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,528,609
Number of Sequences: 28952
Number of extensions: 182025
Number of successful extensions: 430
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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