Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30524
         (479 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5WIH2 Cluster: Putative uncharacterized protein; n=1; ...    35   1.1  
UniRef50_UPI0000ECA349 Cluster: Retinoid-binding protein 7 (Cell...    33   4.4  

>UniRef50_Q5WIH2 Cluster: Putative uncharacterized protein; n=1;
           Bacillus clausii KSM-K16|Rep: Putative uncharacterized
           protein - Bacillus clausii (strain KSM-K16)
          Length = 273

 Score = 34.7 bits (76), Expect = 1.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 220 LFTAINIPELPFVVKEKHRECKHNLLPRHNVYFLGYFIM 104
           LF  + +  LPF+ +  H E KH+  P H V  +G F++
Sbjct: 88  LFAGLVLGILPFLWRSAHAETKHSFKPLHYVLMIGAFVL 126


>UniRef50_UPI0000ECA349 Cluster: Retinoid-binding protein 7
           (Cellular retinoic acid-binding protein 4) (CRBP4)
           (Cellular retinoic acid-binding protein IV) (CRABP-IV).;
           n=3; Euteleostomi|Rep: Retinoid-binding protein 7
           (Cellular retinoic acid-binding protein 4) (CRBP4)
           (Cellular retinoic acid-binding protein IV) (CRABP-IV).
           - Gallus gallus
          Length = 252

 Score = 32.7 bits (71), Expect = 4.4
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
 Frame = -2

Query: 445 KTLIDFEKKKLYDIN*LSLEKANNS-SHWLQNEELKLQLRY*NQV--QPYKK 299
           K+L+ ++  KL  I   + EK N   +HWL+ ++L L+LR  NQV  Q +KK
Sbjct: 202 KSLVTWDNDKLICIQ--AGEKKNRGWTHWLEGDDLHLELRCENQVCKQVFKK 251


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 397,802,850
Number of Sequences: 1657284
Number of extensions: 6480254
Number of successful extensions: 13236
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13235
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27290400475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)