Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30524
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    26   2.6  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   2.6  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    26   2.6  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.5  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    25   5.9  

>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 79  SYYINTKSKSIVDLSKGERWKGG 11
           SY++     SI+  S G++WK G
Sbjct: 56  SYFVTRNKSSIIAFSIGKKWKPG 78


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 167  VFFLDYEGQLWNVYCSKQLPSTTRALQLSSARCCDTITQRE 289
            +FF D  G  WN + S ++      +  +  R CDT T  E
Sbjct: 1537 LFFSDIMG--WNFFKSPEIADLNHYIPKTDPRLCDTKTYEE 1575


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 52  FCFSYLYSNFNSFRLQHA**NNLGSTR 132
           FCF   ++ F+SFR Q+A   NL S R
Sbjct: 243 FCFLKSFAMFSSFRSQNANLYNLNSIR 269


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 152 VFTFPVFFLDYEGQLWNVYCSKQLPSTTRA 241
           + TFP    D + QLWNV     L S +++
Sbjct: 72  ILTFPFLDPDSQNQLWNVNFRNLLKSLSKS 101


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -2

Query: 448 SKTLIDFEKKKLYDIN*L---SLEKANNSSHWLQNEELKLQL 332
           SKTL D +K+KL + N +   SL K  N S  LQ E+L   L
Sbjct: 152 SKTLTDLKKRKLVERNKIMYFSLRKGPNFS--LQIEKLNTDL 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,711,470
Number of Sequences: 5004
Number of extensions: 28707
Number of successful extensions: 64
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)