Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30524
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    29   2.6  
SB_25795| Best HMM Match : RVT_1 (HMM E-Value=0.29)                    27   6.1  
SB_42674| Best HMM Match : DUF26 (HMM E-Value=1)                       27   6.1  

>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 123  KYTLCRGNRLCLHSRCFSLTTKGSSGMFIAVNSYPQRREPFS*AARGAVTLSHKG 287
            +Y + +GNR+   ++   LT+K S G    V  Y   R P+  A +     + KG
Sbjct: 1138 QYRVLQGNRIVPAAQVTELTSKLSKGEIGKVMEYTVERRPYPAAVQATAQPATKG 1192


>SB_25795| Best HMM Match : RVT_1 (HMM E-Value=0.29)
          Length = 384

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 161 FPVFFLDYEGQLWNVYCSKQLPSTT 235
           +P+  +D   Q+W+ YC K+LP  T
Sbjct: 112 YPIPVIDESYQIWHRYCWKRLPFGT 136


>SB_42674| Best HMM Match : DUF26 (HMM E-Value=1)
          Length = 493

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 7   NNPLSTSRLSRDPQYFCFSYLY 72
           ++P+ T R   +PQ+FCF Y Y
Sbjct: 447 DDPVHTLRNRMNPQHFCFGYDY 468


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,433,752
Number of Sequences: 59808
Number of extensions: 205861
Number of successful extensions: 370
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)