Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30523
         (826 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   5.1  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   6.8  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    21   9.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   9.0  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            21   9.0  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   9.0  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 723 LAGWVFGRAGFRWV 764
           LA W  G+ GF W+
Sbjct: 340 LAKWANGQTGFPWI 353


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 221 RDHRRSCWSSDRQRRI 174
           RD  R+ WS+ RQR I
Sbjct: 211 RDFLRTYWSAKRQRDI 226


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 479 DFVVLLGDGTTADY 438
           D + L GDGT+A++
Sbjct: 191 DSITLFGDGTSANF 204


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 791 RPAGIPANRNPTEARPAEY 735
           RP G PA  N     PAEY
Sbjct: 433 RPPGDPAFHNQYAHYPAEY 451


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -2

Query: 804 RNRNPAGRNSSQPKPNGSPPGRIPNRP 724
           +N  PAG     P   GSP   +P  P
Sbjct: 90  QNTPPAGYPMDVPHGMGSPGVNVPEYP 116


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -2

Query: 804 RNRNPAGRNSSQPKPNGSPPGRIPNRP 724
           +N  PAG     P   GSP   +P  P
Sbjct: 90  QNTPPAGYPMDVPHGMGSPGVNVPEYP 116


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,521
Number of Sequences: 336
Number of extensions: 3320
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22621642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)