Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30523
         (826 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    30   0.46 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.1  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    27   2.4  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   5.6  
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    25   9.9  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
 Frame = +3

Query: 402 VPPPQPEE-----QRAQVISGCAIPQKHYKIIFIKGPSSFPTGRTHHPPLKPKTNSTPFV 566
           +PPP P        +A  I   ++P        +K P S P+  +  PP+ PK    P  
Sbjct: 149 IPPPSPASAPPIPSKAPPIPS-SLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLS 207

Query: 567 YVLVKKPDEQPDITFPTACF-PHKPFKTPKF 656
              V     +P    P A   P+   ++PKF
Sbjct: 208 QAPVANTSSRPSSFAPPAGHAPNVTSESPKF 238



 Score = 25.8 bits (54), Expect = 7.5
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 813 PPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPSGIEPTFPS 682
           PP+    P   + + P P+  PP   P  P K  PS   P+ PS
Sbjct: 151 PPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSA--PSLPS 192



 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 813 PPARNRNPAGRNSSQPKPNGSPPGRIPN 730
           PP  ++ P    SS+P     P G  PN
Sbjct: 203 PPPLSQAPVANTSSRPSSFAPPAGHAPN 230


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -2

Query: 819 GNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNK 718
           GNPP     P     SQP P   PPG +  R NK
Sbjct: 7   GNPPPPPPPPGFEPPSQPPP-PPPPGYVKKRKNK 39


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 101 GCPLPAHCKCIPPRVWPSRVPQ 36
           GCP   H  C+ P + P  +P+
Sbjct: 134 GCPCSFHLSCLEPPLTPENIPE 155


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 825 RKGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPSGI 700
           ++G PP          S++ K + + P R   RP   RPSG+
Sbjct: 312 KRGRPPLNKPKILFGTSTENKIDENRPKRGRGRPRLERPSGL 353


>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 655 NFGVLKGLCGKQAVGNVISGCSSGFL 578
           +FGV K L  +  +  +++GC+SG L
Sbjct: 194 HFGVAKTLWKRNLLPQILAGCASGAL 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,855
Number of Sequences: 5004
Number of extensions: 52189
Number of successful extensions: 204
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)