Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30523
(826 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 35 0.090
04_04_0483 - 25554531-25554605,25554681-25555644,25555722-255558... 34 0.12
07_03_0830 + 21801228-21801671,21802216-21803103 31 0.84
11_06_0610 - 25449085-25453284 31 1.5
09_06_0374 + 22649455-22650024,22650085-22650637,22650812-226511... 30 1.9
07_03_1160 - 24430240-24431268 30 2.6
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157... 30 2.6
01_06_0922 - 33022709-33023545 29 3.4
01_03_0095 + 12482908-12483111,12485906-12486340,12486434-12486835 29 3.4
05_07_0066 + 27453611-27453627,27454729-27454872,27455998-274566... 29 4.5
10_08_0867 + 21159931-21160075,21160288-21160409,21160539-211606... 29 5.9
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 5.9
09_04_0037 + 13992103-13992624,13993001-13993180,13993423-139936... 29 5.9
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 28 7.8
05_07_0302 - 29091666-29092331 28 7.8
02_02_0171 - 7427862-7428293 28 7.8
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 34.7 bits (76), Expect = 0.090
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -2
Query: 813 PPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPSGIEPTF---PSG 679
PP PA QP P G PPG +P++P + + P F PSG
Sbjct: 79 PPPPFARPAAPVQQQPPPFGGPPGVMPSQPLQQQQQQQRPAFGGPPSG 126
>04_04_0483 -
25554531-25554605,25554681-25555644,25555722-25555847,
25556162-25556331,25556431-25556526
Length = 476
Score = 34.3 bits (75), Expect = 0.12
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = +3
Query: 405 PPPQPEEQRAQVISGCAIPQKHYKIIFIKGPSSFPTGRTHHPPLKPKTNSTPFVYVLVKK 584
PPP P E +V++G A P K SS + PPL P +S P +V
Sbjct: 67 PPPMPVEAAEEVVTG-ARPGKELSEQKASPASSLLPEKQVTPPLSPVAHSPPLAEAVVCT 125
Query: 585 PDEQ 596
PD +
Sbjct: 126 PDPE 129
>07_03_0830 + 21801228-21801671,21802216-21803103
Length = 443
Score = 31.5 bits (68), Expect = 0.84
Identities = 20/44 (45%), Positives = 21/44 (47%)
Frame = +3
Query: 681 QKGRSVLFRKVGAYLAGWVFGRAGFRWVSVGWNSGRPGFYSGPA 812
Q+GR R AYL V RAGF V GW G Y GPA
Sbjct: 360 QRGRPRFGRAARAYLVSDVT-RAGFEGVDFGWGEGA---YGGPA 399
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = -2
Query: 822 KGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPSGIEPTFP 685
K PPA P + + P +P G P+ P PS P P
Sbjct: 609 KSTPPAEKSPPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTP 654
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/46 (28%), Positives = 17/46 (36%)
Frame = -2
Query: 822 KGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPSGIEPTFP 685
K PP P + S P +P G +P+ P P P P
Sbjct: 675 KSTPPTEKSPPTPESESSSPPPPAPEGHMPSPPKSTPPVEKSPPTP 720
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/46 (26%), Positives = 16/46 (34%)
Frame = -2
Query: 822 KGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPSGIEPTFP 685
K PP P + + P +P G P+ P P P P
Sbjct: 708 KSTPPVEKSPPTPESEASSPPPPAPEGHTPSPPKSSPPEEKSPPIP 753
>09_06_0374 +
22649455-22650024,22650085-22650637,22650812-22651147,
22651171-22652605,22652939-22653062
Length = 1005
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = -2
Query: 813 PP--ARNRNPAGRNSSQPKPNGSPPGRIPNRPNK-HRPSGIEPTF 688
PP AR R P GR P G P GR P P + +P G P F
Sbjct: 424 PPGLARPRKPLGRRPPGPARPGKPLGRRPPGPARPGKPLGRRPDF 468
>07_03_1160 - 24430240-24431268
Length = 342
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -2
Query: 813 PPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPSG 703
PP P QPKP+G PP PN+P + P+G
Sbjct: 97 PPIPPVQPCPDQPPQPKPDG-PPLPNPNQPPQPNPNG 132
>07_01_0213 -
1573315-1573485,1573583-1573765,1573858-1574046,
1574182-1574263,1574315-1574421,1575086-1575161,
1575457-1575637,1575711-1575828
Length = 368
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = +3
Query: 714 GAYLAGWVFGRAGFRWVS--VGWNSGRPGFYSGPAGFPS 824
G YL+ W+ W+ VGW PGFY P+ S
Sbjct: 147 GLYLS-WISFHISLMWLEGVVGWYRSNPGFYGRPSNHDS 184
>01_06_0922 - 33022709-33023545
Length = 278
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = -2
Query: 825 RKGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHR-----PSGIEPTFP 685
R+ PA R P R ++ P P+ +P RP+ R PS +EP P
Sbjct: 180 RRSPSPAAKRTPEQRRAASPAPSLQRKPPVPVRPSPRRVQEAPPSPLEPPPP 231
>01_03_0095 + 12482908-12483111,12485906-12486340,12486434-12486835
Length = 346
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 491 LNEDDFVVLLGDGTTADYLCALFF-RLWGGN 402
L +D VVL G T CA FF R+W GN
Sbjct: 180 LTLEDMVVLSGAHTVGRSFCASFFNRVWNGN 210
>05_07_0066 +
27453611-27453627,27454729-27454872,27455998-27456690,
27457700-27458111,27458220-27458297,27458938-27458953,
27459038-27459192
Length = 504
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 813 PPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPSGI-EPTFPS 682
PPA P +S+ P G P R R + H PS I +PT PS
Sbjct: 126 PPAPAPAPPSSSSAAAAP-GRSPARERERDHGHHPSDISDPTSPS 169
>10_08_0867 +
21159931-21160075,21160288-21160409,21160539-21160660,
21160775-21160879,21160967-21161057,21161154-21161297,
21161415-21161783,21161902-21162099
Length = 431
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +2
Query: 506 PHRSHPSSPAQAQNEQYTLCLRVGQETRRTARYHIPHCLLPTQALQNPEVYFHPSTKNPE 685
P + + PA+A++ + TL +G R TA + H +P Q + V FH S NPE
Sbjct: 4 PEKVFVALPAEAKSGRSTLSWALGH-FRATAIV-VTHVHVPPQMIPVMGVKFHASKLNPE 61
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -2
Query: 813 PPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPSGIEPTFPS 682
PPA N G S+ P P PP N P+ P + P P+
Sbjct: 698 PPANRTNGPGVPSAPPPPPPPPPANRSNGPSAPAPP-LPPPLPA 740
>09_04_0037 +
13992103-13992624,13993001-13993180,13993423-13993691,
13994120-13995773
Length = 874
Score = 28.7 bits (61), Expect = 5.9
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Frame = +3
Query: 474 KIIFIKGPSSFPTGRTHHP-PLKPKTNSTPFVYVLVKKPDEQPDITFPTACFPH---KPF 641
++I++ PS+ T P+ NS ++ ++K+ DE P + KP
Sbjct: 326 RLIYLGSPSTLQTHLAGFGRPVPDGENSIEYLLDVIKEYDESTSGLEPLVAYQRDGTKPD 385
Query: 642 KTPKFTFIQVPRTQKGRSVLFRKV 713
K + PRT +SV FR++
Sbjct: 386 GAAKTPVPRTPRTPHQKSVQFRQI 409
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 28.3 bits (60), Expect = 7.8
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = -2
Query: 825 RKGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPSGIEPTFP 685
R PP A S+ P P PPG P P +P G P P
Sbjct: 595 RVPRPPPAPSATANTASALPPPPPRPPGAPPPPPPPGKPGGPPPPPP 641
>05_07_0302 - 29091666-29092331
Length = 221
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 783 RNSSQPKPNGSPPGRIPNRPNKHRPSGIEPTFP 685
RN S+ + P R P RPN +P+ + PT P
Sbjct: 182 RNKSKGR---GPLARAPQRPNLQKPNSLRPTRP 211
>02_02_0171 - 7427862-7428293
Length = 143
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Frame = -2
Query: 816 NPPARNRNPAGRNSSQPKPNGSPPGRIPNR----PNKHRPSGIEPTFPS 682
+PPAR R G +++ P G P R R P RPS PS
Sbjct: 18 SPPARRRRRQGSSTASVAPTGGSPRRRRRRSCTTPGGRRPSPSTSATPS 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,996,550
Number of Sequences: 37544
Number of extensions: 422349
Number of successful extensions: 1963
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1947
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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