Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30523
(826 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36254| Best HMM Match : Filament (HMM E-Value=0.21) 35 0.092
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 35 0.092
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 34 0.12
SB_39120| Best HMM Match : SH3_1 (HMM E-Value=2e-20) 32 0.49
SB_52239| Best HMM Match : Adaptin_N (HMM E-Value=9.9e-36) 31 1.1
SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_43124| Best HMM Match : DUF1162 (HMM E-Value=4.3e-17) 30 2.0
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_31840| Best HMM Match : RuvA_N (HMM E-Value=5.6) 30 2.6
SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 3.5
SB_10553| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_25832| Best HMM Match : fn3 (HMM E-Value=4.2e-08) 29 3.5
SB_9846| Best HMM Match : DUF605 (HMM E-Value=0.046) 29 3.5
SB_31362| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_20117| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_42488| Best HMM Match : ig (HMM E-Value=4.2e-06) 29 4.6
SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69) 29 6.1
SB_33933| Best HMM Match : T-box (HMM E-Value=0) 29 6.1
SB_17198| Best HMM Match : HEAT (HMM E-Value=1.8e-15) 29 6.1
SB_14115| Best HMM Match : GPS (HMM E-Value=4e-08) 29 6.1
SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0) 28 8.0
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_51707| Best HMM Match : TP2 (HMM E-Value=6.3) 28 8.0
>SB_36254| Best HMM Match : Filament (HMM E-Value=0.21)
Length = 589
Score = 34.7 bits (76), Expect = 0.092
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = -2
Query: 825 RKGNPPARN--RNPAGRN-SSQPKPNGSPPGRIPNRPNKHRPSGIEPTFP 685
R+ P RN R+P+G + + QP P + P + P+K PS P+ P
Sbjct: 510 REPYSPTRNVSRSPSGNSVNEQPSPRSNSPHNVSRSPHKQEPSSPRPSSP 559
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 34.7 bits (76), Expect = 0.092
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = -2
Query: 825 RKGNPPARN--RNPAGRN-SSQPKPNGSPPGRIPNRPNKHRPSGIEPTFP 685
R+ P RN R+P+G + + QP P + P + P+K PS P+ P
Sbjct: 3038 REPYSPTRNVSRSPSGNSVNEQPSPRSNSPHNVSRSPHKQEPSSPRPSSP 3087
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 34.3 bits (75), Expect = 0.12
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Frame = -2
Query: 822 KGNPPARNRNPAGRNSSQPKPNGSPPGR---IPNRPNKHRPSGIEPTFP 685
+G P +R P G S P G PPG P+ PN P G P P
Sbjct: 322 RGPDPRGDRGPRGPPSGVPTSGGPPPGHQGLRPSGPNNQGPPGPGPNMP 370
>SB_39120| Best HMM Match : SH3_1 (HMM E-Value=2e-20)
Length = 524
Score = 32.3 bits (70), Expect = 0.49
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 825 RKGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHR 712
+K PP R+R+P R+ P+ + PP R + P + R
Sbjct: 465 KKSTPPRRSRHPPRRSRHPPRRSRHPPRRSRHPPRRQR 502
>SB_52239| Best HMM Match : Adaptin_N (HMM E-Value=9.9e-36)
Length = 723
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = -3
Query: 740 EYPTGQISTDLPE*NRPSLLGSWYLDESKLRGFEGLVWEASSGECDIGLFVGFLDQHVDK 561
++ +G ++ LP+ RP++ W+ ++S +R F+ L+ +A L FL+Q D
Sbjct: 370 DFGSGFMNITLPQLMRPTVAEPWFAEKSWMRNFDFLIPDAPE------LVHTFLEQEQDA 423
Query: 560 GC 555
C
Sbjct: 424 SC 425
>SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -2
Query: 819 GNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPSGIEPT--FPSGFL 673
G P+R R P+ R S+ P+G P R P++ PSG P+ PSG+L
Sbjct: 161 GRLPSR-RLPSRRLPSRRLPSGCLPSRRGQLPSRRLPSGRLPSRRLPSGWL 210
>SB_43124| Best HMM Match : DUF1162 (HMM E-Value=4.3e-17)
Length = 849
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 83 HCKCIPPRVWPSRVPQRQLIPRM 15
H +CIP WPSRVP + L+ R+
Sbjct: 675 HTECIP--FWPSRVPPKDLVVRL 695
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 792 PAGRNSSQPKPNGSPPGRIPNRPNKHRPSGIEP 694
PA R S P P+ SPP + P +H I+P
Sbjct: 981 PASRQSKAPIPHPSPPMQPAKPPRQHTQCSIDP 1013
>SB_31840| Best HMM Match : RuvA_N (HMM E-Value=5.6)
Length = 895
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 506 PHRSHPSSPAQAQNEQYTLCLRVGQETRRTARYHIP 613
PH S ++ +E T CLRV RR RY +P
Sbjct: 433 PHADANCSLSRGCSEASTRCLRVSFSNRRAGRYPVP 468
>SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 806
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 617 SGECDIGLFVGFLDQHVDKGCTVRF 543
SG + FVGF+ + VDK C RF
Sbjct: 296 SGNMPLNAFVGFVSRQVDKSCQWRF 320
>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1041
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = -2
Query: 822 KGNPPARNRNPAGRNSSQPKPNGSPPGR---IPNRPNKHRPSGI 700
K PP + ++ QP P G+PP R P +P+ P G+
Sbjct: 409 KYEPPQQQPQQQRQSPPQPSPTGAPPQRPHPPPQQPSPRPPMGV 452
>SB_10553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 458 PPEALQNHLH*GPQLLPHRSHPSSPAQAQNEQYTLCL 568
P + L NH H P+L HR + P +Q+ +T+ L
Sbjct: 50 PSKRLANHRHKNPRLANHRGIYTKPPDSQSSWHTIPL 86
>SB_25832| Best HMM Match : fn3 (HMM E-Value=4.2e-08)
Length = 313
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 426 QRAQVISGCAIPQKHYKIIFIKGPSSFPTGRTHHPPLKPKTNS 554
QR ISG A+PQ+ Y I+ I P +P+T+S
Sbjct: 257 QRLPSISGSAVPQRKYSILEILKDQQRPRANRIGSEARPRTSS 299
>SB_9846| Best HMM Match : DUF605 (HMM E-Value=0.046)
Length = 811
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -2
Query: 822 KGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPS 706
K N PA N P SS PKPN PN P+ + S
Sbjct: 546 KPNNPASNPKP-NNPSSNPKPNNPASNPKPNNPSSNPKS 583
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -2
Query: 822 KGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKH 715
K N PA N P SS PKPN PN P+ +
Sbjct: 357 KPNNPASNPKP-NNPSSNPKPNNPSSNPKPNNPSSN 391
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -2
Query: 822 KGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKH 715
K N PA N P SS PKPN PN P+ +
Sbjct: 411 KPNNPASNPKP-NNPSSNPKPNNPSSNPKPNNPSSN 445
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -2
Query: 822 KGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKH 715
K N PA N P SS PKPN PN P+ +
Sbjct: 510 KPNNPASNPKP-NNPSSNPKPNNPSSNPKPNNPSSN 544
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -2
Query: 822 KGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKH 715
K N PA N P SS PKPN PN P+ +
Sbjct: 696 KPNNPASNPKP-NNPSSNPKPNNPASNPKPNNPSSN 730
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -2
Query: 822 KGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKH 715
K N PA N P SS PKPN PN P+ +
Sbjct: 768 KPNNPASNPKP-NNPSSNPKPNNPSSNPKPNNPSSN 802
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -2
Query: 822 KGNPPARNRNPAGRN-SSQPKPNGSPPGRIPNRPNKH 715
K N PA N P N SS PKPN PN P+ +
Sbjct: 642 KSNSPASN--PKSNNPSSNPKPNNPASNPKPNNPSSN 676
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = -2
Query: 822 KGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRP 724
K N PA N P SS PKPN PN P
Sbjct: 474 KPNNPASNPKP-NNPSSNPKPNNPASNPKPNNP 505
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = -2
Query: 822 KGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRP 724
K N PA N P SS PKPN PN P
Sbjct: 660 KPNNPASNPKP-NNPSSNPKPNNPSSNPKPNNP 691
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = -2
Query: 822 KGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRP 724
K N PA N P SS PKPN PN P
Sbjct: 714 KPNNPASNPKP-NNPSSNPKPNNPASNPKPNNP 745
>SB_31362| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -2
Query: 822 KGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKH 715
K N PA N P SS PKPN PN P+ +
Sbjct: 108 KPNNPASNPKP-NNPSSNPKPNNPSSNPKPNNPSSN 142
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = -2
Query: 822 KGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRP 724
K N PA N P SS PKPN PN P
Sbjct: 54 KPNNPASNPKP-NNPSSNPKPNNPASNPKPNNP 85
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -2
Query: 822 KGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPS 706
K N P+ N P SS PKPN PN P+ + S
Sbjct: 171 KPNNPSSNPKP-NNPSSNPKPNNPSSNPKPNNPSSNPKS 208
>SB_20117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 207
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -2
Query: 822 KGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKH 715
K N PA N P SS PKPN PN P+ +
Sbjct: 45 KPNNPASNPKP-NNPSSNPKPNNPSSNPKPNNPSSN 79
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -2
Query: 822 KGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKH 715
K N PA N P SS PKPN PN P+ +
Sbjct: 90 KPNNPASNPKP-NNPSSNPKPNNPSSNPKPNNPSSN 124
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -2
Query: 822 KGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKH 715
K N PA N P SS PKPN PN P+ +
Sbjct: 135 KPNNPASNPKP-NNPSSNPKPNNPSSNPKPNNPSSN 169
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -2
Query: 822 KGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKH 715
K N PA N P SS PKPN PN P+ +
Sbjct: 171 KPNNPASNPKP-NNPSSNPKPNNPASNPKPNNPSSN 205
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 822 KGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKH 715
K N PA N P +S PKPN PN P+ +
Sbjct: 27 KSNNPASNPKP-NNPASNPKPNNPASNPKPNNPSSN 61
>SB_42488| Best HMM Match : ig (HMM E-Value=4.2e-06)
Length = 464
Score = 29.1 bits (62), Expect = 4.6
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
Frame = +3
Query: 591 EQPDITFPTA---CFPHKPFKTPKFTFI----QVPRTQKGRS--VLFRKVGAYLAGWVFG 743
E+PD+ + + C + PF T + F+ P + + V+ RK G F
Sbjct: 318 ERPDVDYHSGMFLCISNNPFGTARKYFVVNVPHAPEIDRANTPKVILRKPGPSTFTVYFK 377
Query: 744 RAGFRWVSVGWNSGRPGFYSGPA 812
G+ S+ W FY PA
Sbjct: 378 HLGYPEPSIRWEMQPSWFYGSPA 400
>SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69)
Length = 166
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 768 PKPNGSPPGRIPNRPNKHRPSGIEPTFPSGF 676
P P G PPG P P + P G P +P G+
Sbjct: 4 PGPLGHPPGYAPGYPPGYAP-GHPPGYPPGY 33
>SB_33933| Best HMM Match : T-box (HMM E-Value=0)
Length = 402
Score = 28.7 bits (61), Expect = 6.1
Identities = 20/68 (29%), Positives = 28/68 (41%)
Frame = +2
Query: 506 PHRSHPSSPAQAQNEQYTLCLRVGQETRRTARYHIPHCLLPTQALQNPEVYFHPSTKNPE 685
PH HPSS + Y ++G + R A Y P+ L +PE + T E
Sbjct: 257 PHHHHPSSYPHIPSSPYNRIGQLGIRSHRPAPY--PNPYHKRTDLSSPETFSVSRTLQAE 314
Query: 686 GKVGSIPE 709
G + S E
Sbjct: 315 GPLFSDKE 322
>SB_17198| Best HMM Match : HEAT (HMM E-Value=1.8e-15)
Length = 802
Score = 28.7 bits (61), Expect = 6.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 522 HHPPLKPKTNSTPFVYVLVKKPDEQ 596
HHP K + N ++ L+K+PDE+
Sbjct: 388 HHPHAKDRDNLLHMLFNLIKRPDEE 412
>SB_14115| Best HMM Match : GPS (HMM E-Value=4e-08)
Length = 416
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -2
Query: 813 PPARNRNPAGRNSSQPKPNGSPPGRIPN--RPNKHRPS 706
PP +P + KPNG P + PN RP+ HRP+
Sbjct: 150 PPFTASSPTPTENPN-KPNGRPTPKPPNSNRPSDHRPT 186
>SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 675
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 766 ETQRKPARPNTQPAK*APTFRNRTDLPFWVLGTW 665
+TQRKP P+ +P + NR+ P W G W
Sbjct: 642 DTQRKPCDPDNKPD--STQQCNRSACPEWAAGPW 673
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 28.3 bits (60), Expect = 8.0
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Frame = -2
Query: 819 GNPPARNRNPAGRNSSQPKPNGSPPGRIP---NRPNKHRPSGIEPTFP 685
G PP+ P G S P P G+PP P P+ H P G P P
Sbjct: 2168 GAPPSVPP-PMGAPPSGPPPMGAPPSGPPPMGTPPSGHPPMGAPPMGP 2214
>SB_51707| Best HMM Match : TP2 (HMM E-Value=6.3)
Length = 396
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = -2
Query: 813 PPARNRNPAGRNSS---QPKPNGSPPGRIPNRPN 721
P R+ + A RN PKP G P ++P +PN
Sbjct: 239 PNVRHPSSAPRNKEVQQSPKPRGHPETQVPQQPN 272
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,812,964
Number of Sequences: 59808
Number of extensions: 451995
Number of successful extensions: 2100
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2052
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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