Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30523
         (826 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    27   0.53 
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    25   2.1  
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    25   2.1  
CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein...    25   3.7  
AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox prote...    24   6.5  
U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic aci...    23   8.6  
AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           23   8.6  

>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 27.5 bits (58), Expect = 0.53
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -2

Query: 819 GNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPSG 703
           GN    N N  G +  QP P     G+  N  N +  +G
Sbjct: 70  GNSGNNNNNGVGNHQQQPSPVNEGTGKTNNNNNNNNNNG 108


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
 Frame = -2

Query: 792 PAGRNSSQPKPNGSPPGR-IPNRPNKHRPSGIEPTFP 685
           P G    +P  N  PP    P +P   RP G+ P  P
Sbjct: 186 PPGPQMMRPPGNVGPPRTGTPTQPQPPRPGGMYPQPP 222


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1173

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 18/65 (27%), Positives = 25/65 (38%)
 Frame = +2

Query: 521  PSSPAQAQNEQYTLCLRVGQETRRTARYHIPHCLLPTQALQNPEVYFHPSTKNPEGKVGS 700
            PS P    +    +  R     RR AR             QNP + F  S++  EG+  +
Sbjct: 1050 PSHPVGPSDRNQVIAAR---RERRNARRRERRAREREAQQQNPSLVFSASSEATEGRESA 1106

Query: 701  IPEGR 715
             PE R
Sbjct: 1107 HPERR 1111


>CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein
           protein.
          Length = 415

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 777 SSQPKPNGSPPGRIPNRPNKHRPSGIEPTFP 685
           S QP P G+P   +   P   RPS  +   P
Sbjct: 245 SYQPVPTGTPTRMLNGEPASQRPSSSQMQRP 275


>AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox protein
           protein.
          Length = 338

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +3

Query: 591 EQPDITFPTACFPHKPFKTPKFTFIQ 668
           + P   FP A  PH P   P   F Q
Sbjct: 71  QHPPSVFPHAALPHTPTNQPIVPFWQ 96


>U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic acid
           binding protein protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 764 NPTEARPAEYPTGQISTDLPE*NRPSLLGSWYL 666
           +P +A P E  T +I   L    RPSL   W L
Sbjct: 195 SPLQAAPREPFTDRIWIRLSAYQRPSLWNKWSL 227


>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 813 PPARNRNPAGRNSSQPKPNGSPPGRIPN 730
           PP+  + P  + S QP+P+     ++ N
Sbjct: 280 PPSSQQQPQQQPSQQPQPSSQSNAQLTN 307


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 682,409
Number of Sequences: 2352
Number of extensions: 13940
Number of successful extensions: 54
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 87734433
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)