Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30523
(826 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 33 0.25
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.33
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.33
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.33
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical pr... 31 1.0
M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein ( C.ele... 31 1.0
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 31 1.3
AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical ... 30 2.3
AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical ... 30 2.3
AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical ... 30 2.3
AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical ... 30 2.3
Z78063-3|CAB01502.1| 236|Caenorhabditis elegans Hypothetical pr... 29 3.1
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 29 3.1
AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical... 29 3.1
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 29 3.1
U39999-13|AAA81111.1| 320|Caenorhabditis elegans Hypothetical p... 29 4.0
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 28 7.1
U88315-7|AAL16314.1| 546|Caenorhabditis elegans Nematode astaci... 28 7.1
U88315-6|AAB42372.1| 517|Caenorhabditis elegans Nematode astaci... 28 7.1
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 28 7.1
U88178-2|AAC24413.2| 166|Caenorhabditis elegans Hypothetical pr... 28 9.3
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 33.1 bits (72), Expect = 0.25
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -2
Query: 813 PPARNRNPAGRNSSQPKPNG-SPPGRIPN--RPNKHRPSGIEPTFPSG 679
P +P G + + P PNG SP G PN PN P+G P P+G
Sbjct: 1002 PSPSGPSPNGPSPNGPSPNGPSPNGPSPNGPTPNWPSPNGPSPNGPNG 1049
Score = 32.3 bits (70), Expect = 0.43
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -2
Query: 813 PPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPSGIEPTFPSG 679
PP NP + + P P G P P+ PNK P+G P P+G
Sbjct: 927 PPIPVPNPIPKPNPGPGP-GPPSPNGPSDPNKPSPNGPSPNGPNG 970
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 816 NPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPSG-IEPTFP 685
N P N + ++P PNG PNRP + P+G ++P P
Sbjct: 1236 NKPGPNGPNGPSDPNKPGPNGPNEPSDPNRPGPNGPNGPLDPNKP 1280
Score = 28.7 bits (61), Expect = 5.3
Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -2
Query: 813 PPARNRNPAGRNSSQPKPNG-SPPG-RIPNRPNKHRPSGIEPTFPS 682
PP+ N P+ N +P PNG SP G P+ PNK PSG P PS
Sbjct: 946 PPSPN-GPSDPN--KPSPNGPSPNGPNGPSDPNKPGPSG--PNGPS 986
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 816 NPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPSG 703
N P N + ++P PNGS PN+P + P+G
Sbjct: 1208 NKPGPNGPNEPSDPNKPGPNGSNGPSDPNKPGPNGPNG 1245
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.7 bits (71), Expect = 0.33
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = -2
Query: 819 GNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKH----RPSGIEPT 691
G+PP + P GR P GSPP +P+R + RP+G PT
Sbjct: 414 GSPPTGSP-PTGRPPRGSPPTGSPPTGLPSRQKRQAPEDRPTGSPPT 459
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.7 bits (71), Expect = 0.33
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = -2
Query: 819 GNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKH----RPSGIEPT 691
G+PP + P GR P GSPP +P+R + RP+G PT
Sbjct: 435 GSPPTGSP-PTGRPPRGSPPTGSPPTGLPSRQKRQAPEDRPTGSPPT 480
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.7 bits (71), Expect = 0.33
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = -2
Query: 819 GNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKH----RPSGIEPT 691
G+PP + P GR P GSPP +P+R + RP+G PT
Sbjct: 420 GSPPTGSP-PTGRPPRGSPPTGSPPTGLPSRQKRQAPEDRPTGSPPT 465
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -2
Query: 813 PPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPSGI--EPTFPS 682
PPA R P +++P P PP R P P+ PS EP PS
Sbjct: 321 PPATTRAPPA--TTRPAPASQPPVREPETPDSGYPSPAPQEPAHPS 364
>Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical
protein T01B7.7 protein.
Length = 348
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = -2
Query: 813 PPARNRNP-AGRNSSQPKPNGSPPGRIPNRPNKHR-PSGIEP--TFPSG 679
PPA NP G +SQP P P IPN N+ + P G P FP+G
Sbjct: 84 PPAPTPNPYGGYGASQPAPPEKFPDGIPNGGNQPKFPGGGFPDGPFPNG 132
>M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein (
C.elegans collagen (rol-6) gene, complete cds. ).
Length = 348
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = -2
Query: 813 PPARNRNP-AGRNSSQPKPNGSPPGRIPNRPNKHR-PSGIEP--TFPSG 679
PPA NP G +SQP P P IPN N+ + P G P FP+G
Sbjct: 84 PPAPTPNPYGGYGASQPAPPEKFPDGIPNGGNQPKFPGGGFPDGPFPNG 132
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical
protein Y49E10.10 protein.
Length = 425
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Frame = -2
Query: 822 KGNPPARNRNPAGRNSSQPKPNGSPPGRIPN----RPNKHRPSGIEPTFP 685
K P A + S PKP G P PN P+K +P G +P P
Sbjct: 86 KPGPNAGDTTKPNSQSGDPKPRGGDPAGKPNPPAGDPSKTKPQGGDPAKP 135
>AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical
protein T23E7.2e protein.
Length = 908
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = -2
Query: 813 PPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPSGIEPT 691
PP + + S P P + P +P P PS + PT
Sbjct: 296 PPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPT 336
>AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical
protein T23E7.2b protein.
Length = 880
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = -2
Query: 813 PPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPSGIEPT 691
PP + + S P P + P +P P PS + PT
Sbjct: 246 PPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPT 286
>AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical
protein T23E7.2c protein.
Length = 885
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = -2
Query: 813 PPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPSGIEPT 691
PP + + S P P + P +P P PS + PT
Sbjct: 296 PPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPT 336
>AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical
protein T23E7.2a protein.
Length = 930
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = -2
Query: 813 PPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPSGIEPT 691
PP + + S P P + P +P P PS + PT
Sbjct: 296 PPTPKTAASEKQSVPPTPKSAAPSEVPPTPKSAAPSEVPPT 336
>Z78063-3|CAB01502.1| 236|Caenorhabditis elegans Hypothetical
protein F45D3.3 protein.
Length = 236
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -2
Query: 786 GRNSSQPKPNGSPPGRIPNRPNKHRPSGIEPTFPSGFL 673
G + PK + PG+ +P +P G+ P F GF+
Sbjct: 55 GVETMVPKKSEKLPGQKKMKPEFQQPEGVAPEFTGGFM 92
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 825 RKGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPSGIEP 694
R +PP R R+ +G + + SPP +PN P + + I P
Sbjct: 114 RSRSPPPRRRSRSG--GDRRRRERSPPSMVPNSPQRVKEPVINP 155
>AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical
protein Y41C4A.19 protein.
Length = 289
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -2
Query: 819 GNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPSGI--EPTFPSGF 676
G PPA+ +P +P P G PPG P P +G +P F SGF
Sbjct: 119 GRPPAQPCDPITPPPCRPCPQG-PPG-APGSPGPQGDAGAPGQPGFGSGF 166
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 825 RKGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPSGIEP 694
R +PP R R+ +G + + SPP +PN P + + I P
Sbjct: 114 RSRSPPPRRRSRSG--GDRRRRERSPPSMVPNSPQRVKEPVINP 155
>U39999-13|AAA81111.1| 320|Caenorhabditis elegans Hypothetical
protein F41G3.2 protein.
Length = 320
Score = 29.1 bits (62), Expect = 4.0
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Frame = +2
Query: 494 PQLLPHRSHPSSPAQAQNEQYTL----CLR----VGQETRRTARYHIPHCLLPTQALQNP 649
PQ+ HRS Q Q E + + LR VG+ R +R P + + Q P
Sbjct: 174 PQMHDHRSQDGGYRQPQTETFFVRHQPLLRRRTPVGRNQLRHSRRSRPSQFIQAYSFQPP 233
Query: 650 EVYFHPSTKNP 682
E FH +K+P
Sbjct: 234 EFQFHLISKDP 244
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = -2
Query: 825 RKGNPPA--RNRNPAGRNSSQPKPNGSPPGRIPNRPNKHR-PSGIEPTFP 685
R +PPA R R+P+ S P+ S P + P P + R PSG + P
Sbjct: 430 RSKSPPAPRRRRSPSQSKSPAPRRRRS-PSKSPQAPRRRRSPSGSKSRSP 478
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = -2
Query: 819 GNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRP 709
G+P AR AG P GSP P R + P
Sbjct: 199 GSPAARRGGSAGNRRRSPPRRGSPRRGSPRRDTRRSP 235
>U88315-7|AAL16314.1| 546|Caenorhabditis elegans Nematode astacin
protease protein9, isoform b protein.
Length = 546
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +3
Query: 723 LAGWVFGRAGFRWVSVGWNSGRPGFYSGPAGF 818
LAG+ GR FR G+N G GF+ GP GF
Sbjct: 21 LAGFQNGR--FRGGPDGFNRGPGGFHRGPDGF 50
>U88315-6|AAB42372.1| 517|Caenorhabditis elegans Nematode astacin
protease protein9, isoform a protein.
Length = 517
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +3
Query: 723 LAGWVFGRAGFRWVSVGWNSGRPGFYSGPAGF 818
LAG+ GR FR G+N G GF+ GP GF
Sbjct: 21 LAGFQNGR--FRGGPDGFNRGPGGFHRGPDGF 50
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -2
Query: 819 GNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPSGIEP 694
G PP+ P N S P+G PPG P P+ PSG+ P
Sbjct: 489 GAPPSGGP-PGPFNPSGAPPSGGPPG--PFDPSGAPPSGMPP 527
>U88178-2|AAC24413.2| 166|Caenorhabditis elegans Hypothetical
protein W09C3.3 protein.
Length = 166
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 657 TFIQVPRTQKGRSVLFRKVGAYLAGWVFGRAGFRWVSV 770
TF +G SVL+ K+G Y V +AGF SV
Sbjct: 9 TFYGADPIVEGNSVLYSKIGKYFPFAVGEKAGFSMASV 46
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,872,658
Number of Sequences: 27780
Number of extensions: 327733
Number of successful extensions: 1505
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1487
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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