Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30523
(826 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g14540.1 68418.m01704 proline-rich family protein contains pr... 33 0.30
At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger) fa... 33 0.30
At5g37380.2 68418.m04492 DNAJ heat shock N-terminal domain-conta... 31 0.93
At5g37380.1 68418.m04491 DNAJ heat shock N-terminal domain-conta... 31 0.93
At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger) fa... 31 0.93
At1g79480.1 68414.m09263 hypothetical protein low similarity to ... 31 1.2
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ... 31 1.2
At3g24540.1 68416.m03082 protein kinase family protein contains ... 30 2.1
At1g23540.1 68414.m02960 protein kinase family protein contains ... 30 2.1
At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 30 2.1
At4g34440.1 68417.m04894 protein kinase family protein contains ... 29 2.8
At3g47660.1 68416.m05188 regulator of chromosome condensation (R... 29 2.8
At5g52730.1 68418.m06545 heavy-metal-associated domain-containin... 29 3.7
At5g38560.1 68418.m04662 protein kinase family protein contains ... 29 3.7
At5g58640.1 68418.m07348 selenoprotein-related contains weak sim... 29 5.0
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 29 5.0
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 29 5.0
At1g77720.1 68414.m09049 protein kinase family protein contains ... 29 5.0
At5g52660.2 68418.m06538 myb family transcription factor contain... 28 6.5
At5g52660.1 68418.m06537 myb family transcription factor contain... 28 6.5
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 28 8.7
At4g37640.1 68417.m05324 calcium-transporting ATPase 2, plasma m... 28 8.7
At4g01090.1 68417.m00147 extra-large G-protein-related contains ... 28 8.7
At3g02790.1 68416.m00271 zinc finger (C2H2 type) family protein ... 28 8.7
At1g48620.1 68414.m05439 histone H1/H5 family protein weak simil... 28 8.7
>At5g14540.1 68418.m01704 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 547
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -2
Query: 813 PPARNRNPAGRNSSQPK-PNGSPPGRIPNRPNKHRPSGIEPT 691
PP + ++P+G N +P P S P P +P H P G P+
Sbjct: 341 PPPQLQHPSGYNPEEPPYPQQSYPPNPPRQPPSHPPPGSAPS 382
>At1g19310.1 68414.m02401 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 226
Score = 32.7 bits (71), Expect = 0.30
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 786 GRNSSQPKPNGSPPGRIPNRPNKHRPSGIEPTFPS-GF 676
G++S+ P+ P +PNRP+ RP +P P+ GF
Sbjct: 79 GKSSADPRSKSIPGLEVPNRPSGQRPETAQPPDPNHGF 116
>At5g37380.2 68418.m04492 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI4 DnaJ
homolog subfamily B member 12 {Mus musculus}; contains
Pfam profile PF00226: DnaJ domain
Length = 431
Score = 31.1 bits (67), Expect = 0.93
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 822 KGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRP-NKHRP 709
+ NPPA+ NP + ++ P +PP + N P K+ P
Sbjct: 166 RNNPPAQKTNPPAQKTNPPAQKTNPPAQKNNPPTQKNNP 204
Score = 31.1 bits (67), Expect = 0.93
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 825 RKGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNK 718
+K NPPA+ NP + ++ P +PP + N P K
Sbjct: 172 QKTNPPAQKTNPPAQKTNPPAQKNNPPTQ-KNNPQK 206
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = -2
Query: 825 RKGNPPARNRNPAGRNSSQPKPNGS--PPGRIPNR---PNKHRPSG 703
+K NPPA+ NP + ++ KP G+ GR N PN SG
Sbjct: 186 QKTNPPAQKNNPPTQKNNPQKPVGTTQKTGRTDNHTTTPNSFTASG 231
>At5g37380.1 68418.m04491 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI4 DnaJ
homolog subfamily B member 12 {Mus musculus}; contains
Pfam profile PF00226: DnaJ domain
Length = 431
Score = 31.1 bits (67), Expect = 0.93
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 822 KGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRP-NKHRP 709
+ NPPA+ NP + ++ P +PP + N P K+ P
Sbjct: 166 RNNPPAQKTNPPAQKTNPPAQKTNPPAQKNNPPTQKNNP 204
Score = 31.1 bits (67), Expect = 0.93
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 825 RKGNPPARNRNPAGRNSSQPKPNGSPPGRIPNRPNK 718
+K NPPA+ NP + ++ P +PP + N P K
Sbjct: 172 QKTNPPAQKTNPPAQKTNPPAQKNNPPTQ-KNNPQK 206
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = -2
Query: 825 RKGNPPARNRNPAGRNSSQPKPNGS--PPGRIPNR---PNKHRPSG 703
+K NPPA+ NP + ++ KP G+ GR N PN SG
Sbjct: 186 QKTNPPAQKNNPPTQKNNPQKPVGTTQKTGRTDNHTTTPNSFTASG 231
>At2g23780.1 68415.m02840 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 227
Score = 31.1 bits (67), Expect = 0.93
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 786 GRNSSQPKPNGSPPGRIPNRPNKHRPSGIEP 694
G+N + P+ P RIPNRP RP P
Sbjct: 84 GKNQTDPRSKRYPGLRIPNRPTGQRPETAAP 114
>At1g79480.1 68414.m09263 hypothetical protein low similarity to
beta-1,3-glucanase-like protein GI:9758115 from
[Arabidopsis thaliana]
Length = 356
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 816 NPPARNRNP-AGRNSSQPKPNGSPPGRIPNRP 724
NPP + NP +SS P N +PP +PN P
Sbjct: 101 NPPESSSNPNPPDSSSNPNSNPNPPVTVPNPP 132
>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
family protein low similarity to Translation initiation
factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
aphidicola} SP|P46243, {Salmonella typhimurium}
SP|P33321; contains Pfam profiles PF05198: Translation
initiation factor IF-3 N-terminal domain, PF00707:
Translation initiation factor IF-3 C-terminal domain
Length = 520
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -2
Query: 807 ARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPSGIEPTFPS 682
A N+ P GR Q PN P P PN+ +P FPS
Sbjct: 355 APNQQPTGRFDPQ-SPNQPPSAPRPQFPNQQPTGRFDPQFPS 395
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -2
Query: 810 PARNRNPAGRNSSQPKPNGSPPGRI-PNRPNKHRPSGIEPTFPS 682
P ++ NP S PN P GR P PN+ PS P FP+
Sbjct: 340 PNQHVNPQRPRFSNQAPNQQPTGRFDPQSPNQ-PPSAPRPQFPN 382
>At3g24540.1 68416.m03082 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 509
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Frame = -2
Query: 813 PPARNRNPAGRNSSQPKPNGSP----PGRIPNR--PNKHRPSGIEPTFPS 682
PP + P + S P P SP P R+ NR P PSG EPT P+
Sbjct: 57 PPPPPKAPVNVSLSPPPPPRSPSTSTPPRLGNRNPPPPASPSGQEPTTPT 106
>At1g23540.1 68414.m02960 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 720
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = +3
Query: 495 PSSFPTGRTHHPPLKPKTNSTPFVYVLVKKPDEQPDITFPTACFPHKPFKTP 650
P P+G PP P +PF V K P P + P+ P K TP
Sbjct: 178 PPIQPSGPATSPPANPNAPPSPFPTVPPKTPSSGP-VVSPSLTSPSKGTPTP 228
>At1g20130.1 68414.m02518 family II extracellular lipase, putative
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
Length = 1006
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -2
Query: 813 PPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPSGIEPTFP 685
PPA + +P +P+P PP P P K +P P P
Sbjct: 43 PPAPSPSPCPSPPPKPQPKPVPPPACPPTPPKPQPKPAPPPEP 85
>At4g34440.1 68417.m04894 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 670
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -2
Query: 813 PPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPSGIEPTFP 685
PP + +P SS P +P + P P+ P G P P
Sbjct: 61 PPTQETSPPTSPSSSPPVVANPSPQTPENPSPPAPEGSTPVTP 103
>At3g47660.1 68416.m05188 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1)
Length = 951
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 765 KPNGSPPGRIPNRPNKHRPSGIE 697
KP+ SPP I NRP H G++
Sbjct: 205 KPHTSPPETIENRPTNHSSPGVD 227
>At5g52730.1 68418.m06545 heavy-metal-associated domain-containing
protein contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 185
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = -2
Query: 810 PARNRNPAGRN--SSQPKPNGSPPGRIPNRPNKH-RPS 706
P +NR+ R S +P+PN +P R +RP H RPS
Sbjct: 128 PEQNRSRVTRREPSREPEPNRAPLARRESRPRTHSRPS 165
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -2
Query: 813 PPARNRNPAGRNSSQP--KPNGSPPGRIPNRPNKHRPSGIEPT 691
PP + +P ++ P KP+ SPPG P+ P + PS +P+
Sbjct: 118 PPDASPSPPAPTTTNPPPKPSPSPPGETPSPPGE-TPSPPKPS 159
>At5g58640.1 68418.m07348 selenoprotein-related contains weak
similarity to Selenoprotein W (Swiss-Prot:P49904)
[Rattus norvegicus]
Length = 228
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = -2
Query: 768 PKPNGSPPGRIPNRPNKHRPSGIEP---TFPS 682
PKP P + P+ P++HRP+ I P FPS
Sbjct: 29 PKPQPHRPHQPPHIPHQHRPNAIIPETLDFPS 60
>At5g54650.2 68418.m06805 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -2
Query: 813 PPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPSGIEPTFPS 682
PP R ++P R SS P P+ SPP P + N + S P P+
Sbjct: 163 PPTRPKSPPPRKSSFP-PSRSPPPP-PAKKNASKNSTSAPVSPA 204
>At5g54650.1 68418.m06804 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -2
Query: 813 PPARNRNPAGRNSSQPKPNGSPPGRIPNRPNKHRPSGIEPTFPS 682
PP R ++P R SS P P+ SPP P + N + S P P+
Sbjct: 163 PPTRPKSPPPRKSSFP-PSRSPPPP-PAKKNASKNSTSAPVSPA 204
>At1g77720.1 68414.m09049 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 777
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +3
Query: 417 PEEQRAQVISGCAIPQKHYKIIFIKGPSSFPTGRTHHPPLKPKTN 551
PEE V S KH K+ KGPS+ P R + P L K N
Sbjct: 353 PEELHTSVSSQPQKSDKHEKVASSKGPSA-PRKRNYDPDLFFKVN 396
>At5g52660.2 68418.m06538 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA-binding domain
Length = 331
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +3
Query: 399 HVPPPQPEEQRAQVISGCAIPQKHYKIIFIKGPSSFPTGRTHHPP---LKPKTNS 554
H+PPP+P+ + A PQK +K + ++ P SF + + P +P+++S
Sbjct: 128 HLPPPRPKRKAAH-----PYPQKAHKNVQLQVPGSFKSTSEPNDPSFMFRPESSS 177
>At5g52660.1 68418.m06537 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA-binding domain
Length = 330
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +3
Query: 399 HVPPPQPEEQRAQVISGCAIPQKHYKIIFIKGPSSFPTGRTHHPP---LKPKTNS 554
H+PPP+P+ + A PQK +K + ++ P SF + + P +P+++S
Sbjct: 128 HLPPPRPKRKAAH-----PYPQKAHKNVQLQVPGSFKSTSEPNDPSFMFRPESSS 177
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = +3
Query: 495 PSSFPTGRTHHPPLKPKTNSTPFVYVLVKKPDEQPDITFPTACFPHKPFKTPKFTFIQVP 674
P PT + P+KP T + P VK P P + PT P P K P ++ P
Sbjct: 151 PVQPPTYKPPTSPVKPPTTTPP-----VKPPTTTPPVQPPTYNPPTTPVKPPTAPPVKPP 205
>At4g37640.1 68417.m05324 calcium-transporting ATPase 2, plasma
membrane-type / Ca(2+)-ATPase isoform 2 (ACA2) identical
to SP|O81108 Calcium-transporting ATPase 2, plasma
membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 2)
{Arabidopsis thaliana}
Length = 1014
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 734 PTGQISTDLPE*N-RPSLLGSWYLDESKLRGFEGLVWEA 621
PT +ST+ + + R L G ES++RGF VWEA
Sbjct: 130 PTDGLSTEAAQLSQRQELFGINKFAESEMRGFWVFVWEA 168
>At4g01090.1 68417.m00147 extra-large G-protein-related contains
weak similarity to extra-large G-protein [Arabidopsis
thaliana] gi|3201682|gb|AAC19353
Length = 714
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = -2
Query: 819 GNPPARNRNPAG---RNSSQPKPNGSPPGRIPNRPNKHRPSG 703
G P ++P G R P PN PPG PN+ + P G
Sbjct: 147 GMYPQAYQDPYGYQRRPPPVPNPNWYPPGHYPNQMARQYPGG 188
>At3g02790.1 68416.m00271 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 105
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 569 RVGQETRRTARYHIPHCLLPTQALQNPEVYFHPSTKNP 682
R G+E A+Y PHC + L+ ++ H +K+P
Sbjct: 36 RTGKEKGGHAKYECPHCKITAPGLKTMQI--HHESKHP 71
>At1g48620.1 68414.m05439 histone H1/H5 family protein weak
similarity to HMG I/Y like protein [Glycine max]
GI:15706274, HMG-I/Y protein HMGa [Triticum aestivum]
GI:20502966; contains Pfam profiles PF00538: linker
histone H1 and H5 family, PF02178: AT hook motif
Length = 479
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/45 (35%), Positives = 17/45 (37%)
Frame = +3
Query: 495 PSSFPTGRTHHPPLKPKTNSTPFVYVLVKKPDEQPDITFPTACFP 629
PS T HHPP T+ PF P T PTA P
Sbjct: 3 PSLSATNDPHHPPPPQFTSFPPFTNTNPFASPNHPFFTGPTAVAP 47
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,316,452
Number of Sequences: 28952
Number of extensions: 309735
Number of successful extensions: 1261
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1892353600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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