Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30522
         (824 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9W2E6 Cluster: CG15678-PA; n=2; Sophophora|Rep: CG1567...    37   0.53 
UniRef50_O04153 Cluster: Calreticulin-3 precursor; n=78; Eukaryo...    33   6.6  
UniRef50_Q2J7R1 Cluster: Putative uncharacterized protein; n=1; ...    33   8.7  
UniRef50_Q9VB07 Cluster: CG12880-PA; n=2; Sophophora|Rep: CG1288...    33   8.7  
UniRef50_P00562 Cluster: Bifunctional aspartokinase/homoserine d...    33   8.7  

>UniRef50_Q9W2E6 Cluster: CG15678-PA; n=2; Sophophora|Rep:
           CG15678-PA - Drosophila melanogaster (Fruit fly)
          Length = 197

 Score = 37.1 bits (82), Expect = 0.53
 Identities = 15/53 (28%), Positives = 32/53 (60%)
 Frame = +3

Query: 126 NIVGNKKKVTMETNSTLLKVVGNNCIVYVRTNYGDIEVVGNDCGWR*RRTTGS 284
           ++VGN K+  +E N+  L+++GN   + +  N G ++V+GN    + +  +G+
Sbjct: 52  DLVGNCKEYRIENNTRDLRIIGNGNRIRIVNNSGQLQVIGNSTRLKIQNNSGA 104



 Score = 35.5 bits (78), Expect = 1.6
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = +3

Query: 129 IVGNKKKVTMETNSTLLKVVGNNCIVYVRTNYGDIEVVGND 251
           I+GN  ++ +  NS  L+V+GN+  + ++ N G ++  GND
Sbjct: 71  IIGNGNRIRIVNNSGQLQVIGNSTRLKIQNNSGALKYTGND 111


>UniRef50_O04153 Cluster: Calreticulin-3 precursor; n=78;
           Eukaryota|Rep: Calreticulin-3 precursor - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 424

 Score = 33.5 bits (73), Expect = 6.6
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
 Frame = +2

Query: 302 NGFVNISKRWKGDNVQLL--GPNCSLTVAGKLKSAPSYEAQLSPFSKDLD---DVIESIF 466
           +G+VN  K++ GD    L  GP+   T   KL    SY+ Q  P  KDL    D +   +
Sbjct: 123 SGYVN-QKQFGGDTPYSLMFGPDICGTQTKKLHVIVSYQGQNYPIKKDLQCETDKLNHFY 181

Query: 467 TFVMR 481
           TF++R
Sbjct: 182 TFILR 186


>UniRef50_Q2J7R1 Cluster: Putative uncharacterized protein; n=1;
           Frankia sp. CcI3|Rep: Putative uncharacterized protein -
           Frankia sp. (strain CcI3)
          Length = 511

 Score = 33.1 bits (72), Expect = 8.7
 Identities = 23/62 (37%), Positives = 26/62 (41%)
 Frame = +1

Query: 259 GGDGEPRGHQPCGRERFCEHQQTLERRQRSTPRAEL*PDRCGEAEVSPVVRSPAVAIQQG 438
           GG GEPR     GR R  + Q    R+ RS PR     D     E  P  R P    + G
Sbjct: 335 GGLGEPRSLPDPGRRRRGQSQPGPHRQPRSQPRPRPAGDTSVGGEGDPGGREPVGDRRGG 394

Query: 439 PG 444
           PG
Sbjct: 395 PG 396


>UniRef50_Q9VB07 Cluster: CG12880-PA; n=2; Sophophora|Rep:
           CG12880-PA - Drosophila melanogaster (Fruit fly)
          Length = 330

 Score = 33.1 bits (72), Expect = 8.7
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 293 VGGNGFVNISKRWKGDNVQLLGPNCSLTVAGKLKSAPSYEAQLSPFSKDLDDV 451
           VG + F+N+   W G    LLG  C L +A  ++ A +  A  +P +    DV
Sbjct: 6   VGKHKFINMRPSWMGTAAWLLGLYCLLCIAAMVEGASNSVALAAPTASAAKDV 58


>UniRef50_P00562 Cluster: Bifunctional aspartokinase/homoserine
            dehydrogenase II (AKII-HDII) [Includes: Aspartokinase II
            (EC 2.7.2.4); Homoserine dehydrogenase II (EC 1.1.1.3)];
            n=56; Gammaproteobacteria|Rep: Bifunctional
            aspartokinase/homoserine dehydrogenase II (AKII-HDII)
            [Includes: Aspartokinase II (EC 2.7.2.4); Homoserine
            dehydrogenase II (EC 1.1.1.3)] - Escherichia coli (strain
            K12)
          Length = 810

 Score = 33.1 bits (72), Expect = 8.7
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
 Frame = +2

Query: 152  DNGDELDPSESSRKQLHR----LCSY*LRRHRGGWQRLWVE-VTENHGVINLVGGNGFVN 316
            +NGDEL+     R +  R    +  Y  R    G  R+ VE V E+H + +L+  +    
Sbjct: 713  ENGDELNEQMVQRLEAAREMGLVLRYVARFDANGKARVGVEAVREDHPLASLLPCDNVFA 772

Query: 317  ISKRWKGDN-VQLLGPNCSLTV-AGKLKSAPSYEAQL 421
            I  RW  DN + + GP     V AG ++S  +  AQL
Sbjct: 773  IESRWYRDNPLVIRGPGAGRDVTAGAIQSDINRLAQL 809


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 881,670,738
Number of Sequences: 1657284
Number of extensions: 19635441
Number of successful extensions: 46659
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 44792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46625
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 71324098314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)