Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30522
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    32   0.11 
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    27   2.4  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    26   5.6  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    25   9.9  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    25   9.9  
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        25   9.9  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    25   9.9  

>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +1

Query: 577 CNP-ETA*YAHTTIVKP*IRPRILQFEKWIKFSKEPLASVGLWY*EIGLKGHP--KNFSK 747
           CNP +TA      I++  + P I++  +WI+    P + +GL   +IG   HP  K    
Sbjct: 196 CNPIDTA--DQKDIIRESLIPSIMESRQWIRDLLLP-SRLGLLL-DIGRIQHPTRKGMFT 251

Query: 748 CWGLFPNLSP*NFGKR 795
           CW    N  P N+G R
Sbjct: 252 CWNTRLNTRPTNYGTR 267


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 367 TIRPEELNVVAFPTFADVHKTVPAHKVDDPVVLRHLHPQSL 245
           T +PE +  V+F   +  HK V      DP +  HL  +SL
Sbjct: 273 TTKPETIIDVSFIALSKNHKLVLLESQKDPSLAEHLRNESL 313


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 962

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -1

Query: 779  YGLRLGNSPQHLEKFFGWPFNPIS*YQRPTLANGSLENLIHFSNCKIRGR 630
            Y LR+ N P H+++ + W   PIS Y      N   E    F + + RG+
Sbjct: 910  YYLRMFNLPFHVKQLYTW-LAPISKYDSEISFNQKKERRKTFLSFERRGK 958


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 459 DSMTSSRSLLNGDSWASYDGA 397
           D+   + SLL+G+ W SY+GA
Sbjct: 98  DTSLIAGSLLHGNIWLSYEGA 118


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 550 VFPGSGLTRCNPETA*YAH 606
           +FPG  L +CNP     AH
Sbjct: 475 LFPGGSLEKCNPSNLDIAH 493


>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 201 IVYVRTNYGDIEVVGNDCGW 260
           IVY  TN+ +++V+ ND GW
Sbjct: 368 IVYNNTNFYNLDVISND-GW 386


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 211 FVLTTATSRWLA-TIVGGGDGEPRGH 285
           F  T   S W+  T+V  G G+P+GH
Sbjct: 692 FHFTNIRSGWIKRTLVAAGFGKPKGH 717


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,632,129
Number of Sequences: 5004
Number of extensions: 80207
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)