Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30522
         (824 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248...    36   0.052
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554...    30   1.9  
10_08_0877 + 21230447-21230815,21231855-21232208,21232417-212325...    29   4.5  
07_03_1139 + 24254662-24255306                                         28   7.8  

>01_06_1654 -
           38924090-38924101,38924183-38924215,38924737-38924829,
           38924909-38924965,38925048-38925143,38925237-38925304,
           38925429-38925486,38925572-38925658,38925935-38925982,
           38926060-38926116,38926200-38926458,38926666-38926858,
           38926991-38927098,38927849-38927957
          Length = 425

 Score = 35.5 bits (78), Expect = 0.052
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
 Frame = +2

Query: 278 GVINLVGGNGFVNISKRWKGDNVQLL--GPNCSLTVAGKLKSAPSYEAQLSPFSKDLD-- 445
           G I L+  +G+VN  K++ GD    L  GP+   T   KL    SY+ Q  P  KDL   
Sbjct: 116 GYIKLM--SGYVN-QKKFSGDTPYSLMFGPDICGTQTKKLHLILSYQGQNYPIKKDLQCE 172

Query: 446 -DVIESIFTFVMR 481
            D +  ++TF++R
Sbjct: 173 TDKLTHVYTFILR 185


>05_06_0014 +
           24854462-24854570,24854958-24855065,24855240-24855432,
           24855892-24856150,24856236-24856292,24856370-24856417,
           24856725-24856811,24856885-24856942,24857084-24857151,
           24857279-24857374,24857483-24857539,24857906-24857952,
           24858184-24858210,24858312-24858504
          Length = 468

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = +2

Query: 302 NGFVNISKRWKGDNVQ--LLGPNCSLTVAGKLKSAPSYEAQLSPFSKDL---DDVIESIF 466
           +G+VN  K++ GD     + GP+       KL    SY+ Q  P  KDL    D +   +
Sbjct: 122 SGYVN-QKKFGGDTPYSFMFGPDICGDQTKKLHLILSYQGQNYPIKKDLKCETDKLTHFY 180

Query: 467 TFVMR 481
           TF++R
Sbjct: 181 TFILR 185


>10_08_0877 +
           21230447-21230815,21231855-21232208,21232417-21232504,
           21232844-21233268,21233477-21233632,21233849-21234016,
           21234170-21234310,21234393-21234629,21234710-21234823,
           21235096-21235272
          Length = 742

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/73 (24%), Positives = 29/73 (39%)
 Frame = +2

Query: 152 DNGDELDPSESSRKQLHRLCSY*LRRHRGGWQRLWVEVTENHGVINLVGGNGFVNISKRW 331
           +NG E + + S + +L        +    GW+  W +     G    VGG       ++W
Sbjct: 664 ENG-EYEKANSEKLRLETRQRMARKMQESGWKPRWFQRDTEDGTFRYVGGYWEAREQRKW 722

Query: 332 KGDNVQLLGPNCS 370
            G N  + G N S
Sbjct: 723 VGCN-DIFGNNVS 734


>07_03_1139 + 24254662-24255306
          Length = 214

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 19/62 (30%), Positives = 25/62 (40%)
 Frame = -2

Query: 433 AEWRQLGFVRRG*LQLPRNGQATIRPEELNVVAFPTFADVHKTVPAHKVDDPVVLRHLHP 254
           A+WR+ G  R   ++ PR G     P  L+  A    A    T P HK  D   +   H 
Sbjct: 84  ADWRRYGATRTPAIRRPRTGARIAAPAALHGRASHLVA---MTPPPHKPPDAAAVASSHD 140

Query: 253 QS 248
            S
Sbjct: 141 SS 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,595,669
Number of Sequences: 37544
Number of extensions: 544845
Number of successful extensions: 1361
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1361
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)