Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30522
         (824 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)             30   2.6  
SB_9053| Best HMM Match : TIG (HMM E-Value=0)                          29   6.1  
SB_9369| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  

>SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)
          Length = 435

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -2

Query: 271 LRHLHPQSLPTTSMSP*LVRT*TMQLFPTTFRRVEFVSIVTFFL 140
           L HL+P S  T   SP L  T  + L+P ++R + F  +VT+ +
Sbjct: 294 LIHLYPISYRTIHFSPLL--TYLINLYPISYRTIHFSPLVTYHI 335



 Score = 29.5 bits (63), Expect = 3.5
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -2

Query: 271 LRHLHPQSLPTTSMSP*LVRT*TMQLFPTTFRRVEFVSIVTFFL 140
           L HL+P S  T   SP  + T  + L+P ++R + F  +VT+ +
Sbjct: 214 LIHLYPISYRTIHFSP--LFTYLIHLYPISYRTIHFSHLVTYLI 255


>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
          Length = 2990

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 524  TVRPRPHYGFFPGAV*PAVTPKP 592
            TVRPR +  F+PG V P + P P
Sbjct: 2531 TVRPRLYACFYPGCVKPTLPPLP 2553


>SB_9369| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -3

Query: 423 DSWASYDGADFSFPATVRLQFGPRS*TLSPFQRLLMF--TKPFPPTRLMTPWFS 268
           D WA + G + + PAT      P++ T S       F  T P PP R M PW S
Sbjct: 5   DDWADFGGFESAVPAT-----NPQASTTSGLISWAAFPATSPAPP-REMIPWVS 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,803,222
Number of Sequences: 59808
Number of extensions: 608609
Number of successful extensions: 1239
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)