Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30522
         (824 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039048-10|AAB94240.2|  421|Caenorhabditis elegans Hypothetical...    29   3.1  
Z81587-9|CAB04708.2|  511|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z81078-5|CAB03078.2|  722|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z75535-4|CAA99828.2|  722|Caenorhabditis elegans Hypothetical pr...    28   7.1  

>AF039048-10|AAB94240.2|  421|Caenorhabditis elegans Hypothetical
           protein F16B4.9 protein.
          Length = 421

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -3

Query: 642 NSGANSRFNNCSVCVLSGFGVTAG*TA 562
           NSG NS    C VC LS  GV  G T+
Sbjct: 14  NSGTNSSETTCKVCELSAHGVHFGVTS 40


>Z81587-9|CAB04708.2|  511|Caenorhabditis elegans Hypothetical
           protein T06G6.3a protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 371 LTVAGKLKSAPSYEAQLSPFSKDLDDVIESI 463
           L  A K KS  S+E  L+P  K+ DD+++S+
Sbjct: 64  LLAAEKRKSPVSWERSLTPDKKNRDDLMDSV 94


>Z81078-5|CAB03078.2|  722|Caenorhabditis elegans Hypothetical
           protein F14B4.1 protein.
          Length = 722

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
 Frame = -2

Query: 349 LNVVAFPTF--ADVHKTVPA---HKVDDPV-VLRHLHPQSLPTTSMSP 224
           L + +FP F  ++V+   P    H+ +DPV VL    P +LPTTS  P
Sbjct: 6   LLLFSFPVFIYSEVNHATPLILPHRNEDPVFVLLSSTPSTLPTTSAPP 53


>Z75535-4|CAA99828.2|  722|Caenorhabditis elegans Hypothetical
           protein F14B4.1 protein.
          Length = 722

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
 Frame = -2

Query: 349 LNVVAFPTF--ADVHKTVPA---HKVDDPV-VLRHLHPQSLPTTSMSP 224
           L + +FP F  ++V+   P    H+ +DPV VL    P +LPTTS  P
Sbjct: 6   LLLFSFPVFIYSEVNHATPLILPHRNEDPVFVLLSSTPSTLPTTSAPP 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,125,409
Number of Sequences: 27780
Number of extensions: 462077
Number of successful extensions: 1178
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)