Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30522
         (824 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      25   1.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   1.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   4.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   4.5  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    22   6.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   6.0  

>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -1

Query: 794 LFPKFYGLRLGNSPQHLEKFFGW--PFNPIS*YQRPTLANG 678
           L  ++Y  RL N   HLE+ F W  PF P   Y   T +NG
Sbjct: 266 LLNRYYLERLSNDLPHLEE-FDWQKPFYP-GYYPTMTYSNG 304


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 212  NINDAIVSDYFQKGRV 165
            N+N+ + SDYF +G V
Sbjct: 970  NVNETVCSDYFSQGGV 985


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -1

Query: 797 NLFPKFYGLRLGNSPQHLEKFFGWPF--NPIS*YQRPTLANGSLENLIHFSN 648
           N+F KF  L+   SP   E         + +  + R T  NGSL  +++FSN
Sbjct: 461 NMFKKFASLK--KSPYFKEANLNTRMLNDNVFAFSRETEDNGSLYAILNFSN 510


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -1

Query: 797 NLFPKFYGLRLGNSPQHLEKFFGWPF--NPIS*YQRPTLANGSLENLIHFSN 648
           N+F KF  L+   SP   E         + +  + R T  NGSL  +++FSN
Sbjct: 461 NMFKKFASLK--KSPYFKEANLNTRMLNDNVFAFSRETEDNGSLYAILNFSN 510


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 205 TMQLFPTTFRRVEFVSIV 152
           TM   PT FRR E  SIV
Sbjct: 26  TMDYIPTRFRRQERGSIV 43


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 662 IHFSNCKIRGRIHGLT 615
           +H  NCKI  ++H  T
Sbjct: 400 LHHPNCKINRKVHHTT 415


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,730
Number of Sequences: 438
Number of extensions: 6103
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)