Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30522
         (824 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to simi...    33   0.17 
At2g35540.1 68415.m04353 DNAJ heat shock N-terminal domain-conta...    32   0.53 
At3g05790.1 68416.m00650 Lon protease, putative similar to Lon p...    29   5.0  
At1g05910.1 68414.m00620 cell division cycle protein 48-related ...    29   5.0  
At2g14800.1 68415.m01677 hypothetical protein                          28   8.7  

>At1g08450.1 68414.m00934 calreticulin 3 (CRT3) identical to similar
           to SP|O04153 Calreticulin 3 precursor {Arabidopsis
           thaliana}
          Length = 424

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
 Frame = +2

Query: 302 NGFVNISKRWKGDNVQLL--GPNCSLTVAGKLKSAPSYEAQLSPFSKDLD---DVIESIF 466
           +G+VN  K++ GD    L  GP+   T   KL    SY+ Q  P  KDL    D +   +
Sbjct: 123 SGYVN-QKQFGGDTPYSLMFGPDICGTQTKKLHVIVSYQGQNYPIKKDLQCETDKLNHFY 181

Query: 467 TFVMR 481
           TF++R
Sbjct: 182 TFILR 186


>At2g35540.1 68415.m04353 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226:
           DnaJ domain
          Length = 575

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = -3

Query: 441 RSLLNGDSWASYDGADFSFPATVRLQFGPRS*TLSPFQRLLMFTKPFPPTRLMTPWFSVT 262
           RS   G  WA YDG D   P +  L     S  L+PF+  + +   F   +L++ W  ++
Sbjct: 366 RSFKKGQIWAIYDGGDDKMPRSYCLVSEVVS--LNPFKVWISWL-DFESEKLIS-WMKIS 421

Query: 261 STHNRC 244
           S+H  C
Sbjct: 422 SSHMPC 427


>At3g05790.1 68416.m00650 Lon protease, putative similar to Lon
           protease homolog 2 SP:P93655
          Length = 942

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 27/80 (33%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
 Frame = +2

Query: 404 SYEAQLSPFSKDLDDVIESIFTFVMR*PAVNSNGFAFLC*TV--RPRPHYGFFPGAV*PA 577
           SYE     FS DLD   +S  T V   P ++       C TV   P PH    PG   P 
Sbjct: 44  SYELGRRSFSSDLDSDTKSSTTTVSAKPHLDD------CLTVIALPLPHKPLIPGFYMPI 97

Query: 578 VTPKPLNTHTLQLLNREFAP 637
               P     LQ   R+ AP
Sbjct: 98  YVKDPKVLAALQESRRQQAP 117


>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
           CDC48-related similar to SP|P54609 Cell division cycle
           protein 48 homolog {Arabidopsis thaliana}; contains Pfam
           profiles PF00004: ATPase AAA family, PF00439:
           Bromodomain
          Length = 1210

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +1

Query: 262 GDGEPRGHQPCGRERFCEHQQTLERRQRSTPRAEL*PDRCGEAEVSPVVRSPAVAIQQGP 441
           GDGE  G +    +   + +Q   +R     RAE+     GE       RSP   + QG 
Sbjct: 206 GDGEDEGEEDGDDDEEGDEEQEGRKRYDLRNRAEVRRMPTGEINKQQQPRSPRRVLHQGM 265

Query: 442 GRR 450
           G R
Sbjct: 266 GTR 268


>At2g14800.1 68415.m01677 hypothetical protein
          Length = 580

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = -2

Query: 451 DVVQVLAEWRQLGFVRRG*LQLPRNGQATIRPEELNVVAFPTFADVHKTVPAHKV 287
           +++++LAE  Q    RR   ++ R    TI P+E    A P+ A   +T+P  K+
Sbjct: 11  ELIRLLAEQDQFLRERRDEAKIRRMKTTTINPQE----ATPSMATTQETIPVEKL 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,080,192
Number of Sequences: 28952
Number of extensions: 435495
Number of successful extensions: 1008
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1892353600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)