Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30521
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    33   0.053
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    30   0.37 
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    30   0.37 
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   2.0  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    28   2.0  
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    27   2.6  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    27   3.5  
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    27   3.5  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    27   3.5  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    27   3.5  
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    27   4.6  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    27   4.6  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    27   4.6  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        26   6.0  
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    26   6.0  
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    26   8.0  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   8.0  
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb...    26   8.0  
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    26   8.0  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           26   8.0  

>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 33.1 bits (72), Expect = 0.053
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = +1

Query: 67  LWLQRCYADSETGSNMIHINTK 132
           +WLQ+C  DSET +N IH NTK
Sbjct: 269 IWLQKCQDDSET-ANWIHANTK 289


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
            Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +3

Query: 336  KNNLLTENETDTKHSRKKSKNMSKGNRSKKE-ASLMVEVPKFEGREYSNASHNIND 500
            K   LT+N T +  SRK+ K+ + G   K++    ++  PK E    +NA+ N  D
Sbjct: 873  KKQTLTDNPTSSNSSRKR-KDFNSGKAIKRDFFGRIISEPKSEAVTSNNAALNTGD 927


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
 Frame = +3

Query: 279 ENTKLL-NPNPVANPKQFPKKNNLLTENETDTKHSRKKSKNMSKGNRSKK---EASLMVE 446
           E  KL  +PNP A PKQ   K+N  +E     K S +++ N S G + +K   E  L+V+
Sbjct: 51  EKQKLTGSPNPQATPKQ-ENKSNFFSE-----KQSVRENGNSSAGEKKQKWTSEQHLLVQ 104

Query: 447 -VPKFEGREY 473
            + K++  +Y
Sbjct: 105 KIIKYKNHQY 114


>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +3

Query: 321 KQFPKKNNLLTENETDTKHSRKKSKNMSKGNRSKKEASLM-VEVPKFEGREYSNASHNIN 497
           KQ   K + L   ET +K S+K   + +  ++SK  +    V VPK    +    +H + 
Sbjct: 51  KQKNTKKDTLVNRETPSKKSQKLETSDALKSKSKDSSKKEPVVVPKKGTPKIFQENHKVK 110

Query: 498 DIFSPK 515
            + SPK
Sbjct: 111 KVKSPK 116


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +3

Query: 306 PVANPKQFPKKNNLLTENETDTKHSRKKSKNMS---KGNRSKKEASLMVEVP 452
           P+  PK+FPK      E + DTK  R  + +     KGN    E S  + VP
Sbjct: 374 PLCPPKRFPKSTKDFKEQKPDTKQVRSATISNDFNLKGNGRYNEKS-QIAVP 424


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 261 SNLTNAENTKLLNPNPVANPKQFPKKN 341
           SN  +A N K  +P+   NP++ PKKN
Sbjct: 121 SNGVHAINGKRTHPDESENPRKLPKKN 147


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 252 KVVSNLTNAENTKLLNPNPVANPKQFPKKNNLLTENETD--TKHSRKKSKNMSKGNRSKK 425
           K + + T+   + LLN N  ++P +F K  + +   +TD   K S   S  +S   +++K
Sbjct: 265 KALPSTTSDAPSSLLNTNVSSSPSKFRKFLSSVIPAKTDLSAKESLTSSTRLSTSYKTRK 324

Query: 426 EAS 434
            +S
Sbjct: 325 RSS 327


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +1

Query: 313 PIQNNFQKRIIYLQKMRQILNILERKVKICLKVTDLRKKRHLWLKCQNLREENILMPVI 489
           P Q   + R + L+K R  + +  +K  I  K     K    W++CQ  ++ ++ +P I
Sbjct: 273 PYQPPIEFRTVRLRKTRNAIGVPNKKYMIEGKCHQCNK----WIRCQGRKDVSVKIPEI 327


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 297 NPNPVANPKQFPKKNNLLTENETDTKHSRKKSKNMSKGNRSKKE 428
           NP+P A PK   +K N+      + KH     +N SK  +S  +
Sbjct: 381 NPDPKAAPKAVSQKTNVDGHRNHEAKHG-NTVQNESKSQKSSNK 423


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +3

Query: 267 LTNAENTKLLNPNPVANPKQFPKKNNLLTENETDTKHSRKKSKNMSKGNRSKKEASLMVE 446
           L NAE+ K     P++   + PK       + + TK S  +   +   + SK+  S    
Sbjct: 421 LANAEDNKTFEHQPLSKDTEAPKSQ----FSSSPTKESTTRKSEVEPPSPSKEIKSSHFS 476

Query: 447 VPKFE 461
           VP+F+
Sbjct: 477 VPEFK 481


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = +3

Query: 330 PKKNNLLTENETDTKHSRKKSKNMSKGNRSKKEASLMVEVPKFEGREYSNASHNINDIFS 509
           PKK N+LTE     K S+K      K N    E S +  +  F+ +   NA     D+  
Sbjct: 325 PKKRNILTEELEKYKKSKKVVLGKRK-NLENDEESTLRALSSFQSK-IRNAED--EDVMD 380

Query: 510 PKYG 521
            +YG
Sbjct: 381 SQYG 384


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 623 VKPRLVDRMVRRKNFKVILKPILPKFLLG 709
           VKP  +D+   + +F  + KP+LP+ L G
Sbjct: 92  VKPTDLDKDFEKNHFLDLKKPLLPQILFG 120


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +3

Query: 360 ETDTKHSRKKSKNMSKGNRSKKEASLM--VEVPKFEGREYSNASH 488
           E  TKHS KKSK  +K    K +  +M  + VP+ E  ++++A +
Sbjct: 157 EDVTKHSGKKSKAAAKTAAVKYQFQIMESLGVPRTEIHKFADAKY 201


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 270 TNAENTKLLNPNPVANPKQFPKKNNLLTENETDTKHSRKKSKN 398
           TN +N K +     +   Q PK+NN   E+  D K   K+  +
Sbjct: 242 TNGQNLKSIMDR-TSTRIQIPKRNNTANESSDDAKKPEKEENS 283


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 393 KNMSKGNRSKKEASLMVEVPKFEGREYSNASHNINDIFSP 512
           K+  K  R KK+      V +  G + S     + DIFSP
Sbjct: 118 KSFFKSGRKKKDVPKSRNVSRSNGADTSVQREKLKDIFSP 157


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 129 SINVYHI*TSFRISITSLKPKNFKVFRLQISQ*PST 22
           S+N  +      +S +SL PK+F+ FR+ + Q  +T
Sbjct: 19  SLNFCYTRNIMSVSASSLVPKDFRAFRIGLVQLANT 54


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 551  RTSAVYWFPPFPG*KVAFYPPNLKVKPRLVDRMVR 655
            R   +YW P +P      + PN+K  P+L+   +R
Sbjct: 1380 RKFILYWEPMYPVSGPVMFMPNVKWNPQLLQYTMR 1414


>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 231

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = +3

Query: 327 FPKKNNLLTENETDTKHSRKKSKNMSKGNRSKKEASLMVEVPKFEGREYSNASHNIN 497
           FPK+   L + +   ++   K K + KGN   K+     ++ +  G   S  S  +N
Sbjct: 34  FPKQFKRLLQQK---EYHESKKKEIKKGNLKNKKKKDYGKIQRLPGERLSEFSQRVN 87


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 348 LTENETDTKHSRKKSKNMSKGNRSKKEASL 437
           +TEN    KHS++K +N  K   ++++ SL
Sbjct: 25  VTENAKKRKHSKEKPQNSRKRQLAEEKKSL 54


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 11/56 (19%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 373 NILERKVKICLKVTDLRKKRHLWLKCQNL-REENILMPVITSTTSLVPNMVRNYTP 537
           N    K+K  +  T +  + + W  C+NL +++ +++P+    ++   N+  ++ P
Sbjct: 84  NTFVEKIKDLIFKTPVIPETNFWSACKNLEKDKKVIVPLAEPLSAKDTNLRASFVP 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,628,323
Number of Sequences: 5004
Number of extensions: 78693
Number of successful extensions: 273
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)