Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30521
         (866 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0147 + 20194244-20195717,20195953-20195969                       29   3.6  
03_02_0384 - 7972067-7972162,7972776-7972985,7973083-7973286,797...    29   4.8  
07_01_0023 - 154119-154541,154697-154741,154875-154922,156104-15...    28   8.4  
05_04_0450 - 21356877-21356942,21357482-21358095,21358173-213585...    28   8.4  

>02_04_0147 + 20194244-20195717,20195953-20195969
          Length = 496

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 133 LKYEKLDYNAGWIPFFQAQPGNQLVPCVSTDTLLQTDEEERLCLI*Q 273
           L ++ +  + GWIP    Q GNQ++P V  D LL+ +    + L+ Q
Sbjct: 333 LVFDTVAESFGWIPPPNQQEGNQMIP-VEGDQLLEINGRLAMTLVSQ 378


>03_02_0384 -
           7972067-7972162,7972776-7972985,7973083-7973286,
           7973381-7973497,7973692-7973810,7974001-7974341,
           7974492-7974646,7974948-7975109,7975262-7975321
          Length = 487

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 354 ENETDTKHSRKKSKNMSKGNRSKKEASLMVEVPKFEGRE 470
           E ETD  H +K +KN  +    K        VP  +GRE
Sbjct: 184 EGETDQVHLKKGNKNGDENKSDKGSGEERAHVPMTKGRE 222


>07_01_0023 -
           154119-154541,154697-154741,154875-154922,156104-156185,
           156365-156444,156606-156677,156827-156921,157479-157515
          Length = 293

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 619 KGKAQIGGPDGPEEKF*GNFKTHFTKISPRHQSP 720
           +GK Q+  P  P+    G+   HF   SPRH+ P
Sbjct: 221 RGKLQVAAPHSPQSAPAGSVG-HFEPASPRHKLP 253


>05_04_0450 -
           21356877-21356942,21357482-21358095,21358173-21358566,
           21358648-21358704
          Length = 376

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 703 EKFW*NGF*NYLKIFPPDHPV 641
           EK W + F N L++ P DHPV
Sbjct: 84  EKIWHHTFYNELRVAPEDHPV 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,290,440
Number of Sequences: 37544
Number of extensions: 464484
Number of successful extensions: 1158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)