Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30521
         (866 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41148| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  
SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)                     30   2.8  
SB_46583| Best HMM Match : Hus1 (HMM E-Value=0)                        29   3.7  
SB_32407| Best HMM Match : WSC (HMM E-Value=0.0008)                    29   4.9  
SB_31707| Best HMM Match : Extensin_2 (HMM E-Value=0.19)               29   6.5  
SB_8672| Best HMM Match : PKD_channel (HMM E-Value=1.4e-38)            29   6.5  
SB_22890| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00078)          28   8.6  
SB_34956| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_9846| Best HMM Match : DUF605 (HMM E-Value=0.046)                   28   8.6  

>SB_41148| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 583

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 10/115 (8%)
 Frame = +3

Query: 171 PILSSSTRESVSSMCVN*YTTAN**RGKVVSNLTNAENT------KLLNPNPVANPKQFP 332
           P+ + S R+  +  C+   T     R +  +  T   N       KLL     + P    
Sbjct: 26  PVFTRSGRKKTNRTCIEDPTPQTERRVRRTTATTGRRNVRISTKRKLLEDTNESEPPSKK 85

Query: 333 KKNNLLTENETDTKHS----RKKSKNMSKGNRSKKEASLMVEVPKFEGREYSNAS 485
              + LTEN T  ++S    R +S    K +  KK+ +L  E  + EG + + ++
Sbjct: 86  SNTSKLTENSTPKQNSAISARTRSWGSLKNSLHKKKLALQKETVESEGEDVATST 140


>SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)
          Length = 2114

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 21/77 (27%), Positives = 35/77 (45%)
 Frame = +3

Query: 315  NPKQFPKKNNLLTENETDTKHSRKKSKNMSKGNRSKKEASLMVEVPKFEGREYSNASHNI 494
            N ++  KKNN   ENE D K  +KK +   + +  KK+     +  + E  E       I
Sbjct: 1908 NEEEDDKKNNK-EENEEDEKKEKKKKEENEEEDDKKKKTKKKKKKEEEEQEEDERRRKEI 1966

Query: 495  NDIFSPKYG*ELYTSLI 545
            ++ F    G +  T++I
Sbjct: 1967 HNGFRDNNGRDQKTNVI 1983


>SB_46583| Best HMM Match : Hus1 (HMM E-Value=0)
          Length = 646

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 20/63 (31%), Positives = 25/63 (39%)
 Frame = +2

Query: 566 YWFPPFPG*KVAFYPPNLKVKPRLVDRMVRRKNFKVILKPILPKFLLGTKVRKSSFKPWF 745
           Y  P  P   V+ Y P LKV   +VDRM    NF  I         LG +    +   +F
Sbjct: 447 YAEPNMPDVDVSIYMPPLKVLRNVVDRMKNLGNFLTISASYTGTMTLGVETDLVTVTTYF 506

Query: 746 TKL 754
             L
Sbjct: 507 KHL 509


>SB_32407| Best HMM Match : WSC (HMM E-Value=0.0008)
          Length = 832

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 20/51 (39%), Positives = 30/51 (58%)
 Frame = +1

Query: 316 IQNNFQKRIIYLQKMRQILNILERKVKICLKVTDLRKKRHLWLKCQNLREE 468
           IQ    +R+ Y Q+MRQ+   LERK +  L+  + R+KRHL  + Q   E+
Sbjct: 191 IQLELNQRL-YRQRMRQLQRRLERKRRQRLRRQE-RRKRHLERQRQRYLEK 239


>SB_31707| Best HMM Match : Extensin_2 (HMM E-Value=0.19)
          Length = 309

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 315 NPKQFPKKNNLLTENETDTKHSRKKSKNMSKGNRSK 422
           NP   P++   +T+  T  KH  KK K+   G R+K
Sbjct: 128 NPGPIPEQFRFMTQQPTKKKHKHKKHKSQD-GERAK 162


>SB_8672| Best HMM Match : PKD_channel (HMM E-Value=1.4e-38)
          Length = 1523

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 336 KNNLLTENETDTKHSRKKSKNMSKGNRSKK 425
           +NN      TDTK  +K+ K    G R KK
Sbjct: 675 RNNGSNSTTTDTKEKKKRKKRKKAGKRKKK 704


>SB_22890| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00078)
          Length = 788

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 279 ENTKLLNPNPVANPKQFPKKNNLLTENETD-TKHSRKKSKNMSK 407
           E +  L+P  V + K F KKN+  ++  T  TK S+KKSK   K
Sbjct: 745 ETSDYLDPEEVPHGK-FVKKNSKKSKKATKKTKKSKKKSKKSKK 787


>SB_34956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +1

Query: 418 LRKKRHLWLKCQNLREENILMPVITSTTSLVP 513
           LRK  HL   C+ LR E  L  +IT   SLVP
Sbjct: 90  LRKSNHLDDPCEVLRAEFRLGKLITGRNSLVP 121


>SB_9846| Best HMM Match : DUF605 (HMM E-Value=0.046)
          Length = 811

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +3

Query: 276 AENTKLLNPNPVANPKQFPKKNNLLTENETDTKHSRKKSKNMSKGNRSKKEAS 434
           + N K  NP    NP   PK NN  +  + +   S  KS + +   +S   +S
Sbjct: 605 SSNPKPNNPXXXXNPSSNPKPNNPSSNPKPNNPSSNPKSNSPASNPKSNNPSS 657


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,265,460
Number of Sequences: 59808
Number of extensions: 513375
Number of successful extensions: 1414
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)