Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30521
         (866 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78015-4|CAB01436.2|  149|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z46241-3|CAA86317.1|  556|Caenorhabditis elegans Hypothetical pr...    31   1.4  
AF003137-8|AAB93645.3|  494|Caenorhabditis elegans Hypothetical ...    30   1.9  
U61958-3|AAB03180.2|  149|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF003137-7|AAN84856.1|  433|Caenorhabditis elegans Hypothetical ...    29   4.3  
AF003137-6|AAB93644.1|  497|Caenorhabditis elegans Hypothetical ...    29   4.3  
U88309-2|AAB42334.1|  211|Caenorhabditis elegans Hypothetical pr...    29   5.7  
AF000299-1|AAC47980.1|  210|Caenorhabditis elegans Hypothetical ...    29   5.7  
Z75953-3|CAB00100.1|  611|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AF166171-1|AAD49860.1|  611|Caenorhabditis elegans adducin-head-...    28   7.5  
AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.      28   7.5  
AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge...    28   7.5  
Z93391-3|CAB07682.1|  363|Caenorhabditis elegans Hypothetical pr...    28   9.9  
Z82274-8|CAB05230.3|  467|Caenorhabditis elegans Hypothetical pr...    28   9.9  
AL132904-25|CAB81956.2|  434|Caenorhabditis elegans Hypothetical...    28   9.9  
AF026211-8|AAB71291.2|  234|Caenorhabditis elegans Hypothetical ...    28   9.9  

>Z78015-4|CAB01436.2|  149|Caenorhabditis elegans Hypothetical
           protein R02D5.7 protein.
          Length = 149

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +3

Query: 261 SNLTNAENTKLLNPNPVANPKQFPKKNNLLTENETDTKHSRKKSKNMSKGNRSKKE 428
           S+L   + TKL  P P A PK+         + E   K   KKS    K ++SKK+
Sbjct: 63  SSLAPVDPTKLATPGPAA-PKKEEAPPPEKPKKEEKPKEKSKKSAKSKKSSKSKKD 117


>Z46241-3|CAA86317.1|  556|Caenorhabditis elegans Hypothetical
           protein C38D4.4 protein.
          Length = 556

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 659 KNFKVILKPILPKFL-LGTKVRKSSFKPWFTKLG*LPFQESLFPTPQPKTP 808
           K++ + +K    ++L LGT  R    +PWFT  G    ++S+ P P+ K P
Sbjct: 281 KSWMMFVKTSFKEWLQLGTDGRVEVKEPWFTNFG-AALKKSMPPAPEKKKP 330


>AF003137-8|AAB93645.3|  494|Caenorhabditis elegans Hypothetical
           protein C27A12.8 protein.
          Length = 494

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = +1

Query: 67  LWLQRCYADSETGSNMIHINTK 132
           LWL++C  DSET SN I+ NTK
Sbjct: 260 LWLKKCNDDSET-SNWINANTK 280


>U61958-3|AAB03180.2|  149|Caenorhabditis elegans Hypothetical
           protein C25A8.2 protein.
          Length = 149

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +3

Query: 261 SNLTNAENTKLLNPNPVANPKQFPKKNNLLTENETDTKHSRKKSKNMSKGNRSKKE 428
           S+L   + TKL  P P A PK+         + E   K   KKS    K ++SKK+
Sbjct: 63  SSLAPVDATKLATPVPAA-PKKEEAPPPEEPKKEEKPKEKSKKSAKSKKSSKSKKD 117


>AF003137-7|AAN84856.1|  433|Caenorhabditis elegans Hypothetical
           protein C27A12.7b protein.
          Length = 433

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +1

Query: 67  LWLQRCYADSETGSNMIHINTK 132
           LW+++C  DSET SN I+ NTK
Sbjct: 199 LWMKKCNDDSET-SNWINSNTK 219


>AF003137-6|AAB93644.1|  497|Caenorhabditis elegans Hypothetical
           protein C27A12.7a protein.
          Length = 497

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +1

Query: 67  LWLQRCYADSETGSNMIHINTK 132
           LW+++C  DSET SN I+ NTK
Sbjct: 263 LWMKKCNDDSET-SNWINSNTK 283


>U88309-2|AAB42334.1|  211|Caenorhabditis elegans Hypothetical
           protein T23B3.5 protein.
          Length = 211

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 321 KQFPKKNNLLTENETDTKHSRKKSKNMSKGNRSKK 425
           K+  KK+    E + + K   KKSK  SK  +SKK
Sbjct: 134 KKDEKKDEKKDEKKDEKKEKSKKSKKSSKSKKSKK 168


>AF000299-1|AAC47980.1|  210|Caenorhabditis elegans Hypothetical
           protein E03H12.5 protein.
          Length = 210

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 321 KQFPKKNNLLTENETDTKHSRKKSKNMSKGNRSKK 425
           K+  KK+    E + + K   KKSK  SK  +SKK
Sbjct: 130 KKDDKKDEKKDEKKDEKKEKSKKSKKSSKSKKSKK 164


>Z75953-3|CAB00100.1|  611|Caenorhabditis elegans Hypothetical
           protein F57F5.4a protein.
          Length = 611

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 348 LTENETDTKHSRKKSKNMSKGNRSKKEASLMVEVPKFEGREYS 476
           + +  +D K +R   ++ S  N    E +  V VPKFEGR+ S
Sbjct: 225 IRDEASDQKRARYSIESTSSTNNQLNEINSFV-VPKFEGRQES 266


>AF166171-1|AAD49860.1|  611|Caenorhabditis elegans
           adducin-head-domain-related protein protein.
          Length = 611

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 348 LTENETDTKHSRKKSKNMSKGNRSKKEASLMVEVPKFEGREYS 476
           + +  +D K +R   ++ S  N    E +  V VPKFEGR+ S
Sbjct: 225 IRDEASDQKRARYSIESTSSTNNQLNEINSFV-VPKFEGRQES 266


>AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.
          Length = 1359

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +3

Query: 303 NPVANPKQFPKKNNLLTEN-ETDTKHSRKKSKNMSKGNRSKKEAS 434
           +P  + K+  K+    +E+ E+D +  RKKSK+  K ++ KKE S
Sbjct: 74  SPRKSSKKSRKRAKSESESDESDEEEDRKKSKSKKKVDQKKKEKS 118


>AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene
           related protein 1 protein.
          Length = 1359

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +3

Query: 303 NPVANPKQFPKKNNLLTEN-ETDTKHSRKKSKNMSKGNRSKKEAS 434
           +P  + K+  K+    +E+ E+D +  RKKSK+  K ++ KKE S
Sbjct: 74  SPRKSSKKSRKRAKSESESDESDEEEDRKKSKSKKKVDQKKKEKS 118


>Z93391-3|CAB07682.1|  363|Caenorhabditis elegans Hypothetical
           protein W04G5.5 protein.
          Length = 363

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = +3

Query: 417 SKKEASLMVEVPKFEGREYSNASHN-INDIF--SPKYG 521
           S K    ++E+P   G EYS  +++ IND++  SPK G
Sbjct: 201 SNKTLGKLIELPFNSGEEYSKFTYDIINDVYSHSPKEG 238


>Z82274-8|CAB05230.3|  467|Caenorhabditis elegans Hypothetical
           protein JC8.2 protein.
          Length = 467

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +3

Query: 351 TENETDTKHSRKKSKNMSKGNRSKKEASLMVEVPKFEGREYSNASHNIND 500
           T+NET+     +      KG R + +  +  E  +FE +     + NI D
Sbjct: 44  TDNETELDDDEESDNEKLKGLRGRGDVEMKDEESEFEKKYMKGYNENIKD 93


>AL132904-25|CAB81956.2|  434|Caenorhabditis elegans Hypothetical
           protein Y111B2A.5a protein.
          Length = 434

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = +3

Query: 288 KLLNPNPVANPKQFPKKNNLLTENETDTKHSRKKSKNMSK---GNRSKKEASLMVEVPKF 458
           K L    +AN ++  +    LTE+E  T+ S +K KN+     G R  +EA    E    
Sbjct: 172 KTLQKQILANEREICQLEEKLTESELKTQRSEEKVKNLEDFIVGER-MEEAEAEAEAAAD 230

Query: 459 EGREYSNASH 488
            G   +  SH
Sbjct: 231 GGGARNEVSH 240


>AF026211-8|AAB71291.2|  234|Caenorhabditis elegans Hypothetical
           protein T13B5.8 protein.
          Length = 234

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 703 PRHQSPEIQF*AMVYQIRLIAFPGKPFSNPPTKNSPWKNWGTKTPLF 843
           P+HQ P  Q   M   +  +A      + PPT+  P + WG   P++
Sbjct: 126 PQHQQPPPQD-VMFGAVGRVAQGAPAAAPPPTQQPPPQLWGNNKPIY 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,505,853
Number of Sequences: 27780
Number of extensions: 422037
Number of successful extensions: 1233
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)