Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30521
         (866 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    24   2.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   2.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   8.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   8.4  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    22   8.4  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   8.4  

>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 378 SRKKSKNMSKGNRSKKEASLMVEVPKFEGREYSNASHNIN 497
           S+++S+N ++  RSK+   +    P      Y+N  +N N
Sbjct: 63  SKERSRNRTERERSKEPKIISNNNPLSNNYNYNNNYNNYN 102


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 593 KVAFYPPNLKVKPRLVDRMVRRKNFKVILKP 685
           K  F  P   VK R+  RM++    K +LKP
Sbjct: 67  KCEFLNPGGSVKDRIAYRMIQDAEDKGLLKP 97


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 13/59 (22%), Positives = 26/59 (44%)
 Frame = +3

Query: 270 TNAENTKLLNPNPVANPKQFPKKNNLLTENETDTKHSRKKSKNMSKGNRSKKEASLMVE 446
           + + +  LL   P  +  +   KNN     +T+  +  +   + SK    KKE + +V+
Sbjct: 41  SRSPSPSLLTSQPHQDHNKEKSKNNHHCNQDTEKLNQLEIESDNSKEVNDKKEENFIVD 99


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 271 QMQKIQSY*ILIQ*PIQNNFQKRIIYLQKMRQ 366
           QMQ++    IL    +Q+  Q+  +YLQ+ +Q
Sbjct: 73  QMQQLLQQHILSPTQLQSFMQQHSLYLQQQQQ 104


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 823 PNFSRGSFWLGGWKKAFLERQL 758
           PN+ + + W  GWK    E+ L
Sbjct: 666 PNYDQVTNWYMGWKGMLSEKIL 687


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/41 (21%), Positives = 24/41 (58%)
 Frame = +3

Query: 378 SRKKSKNMSKGNRSKKEASLMVEVPKFEGREYSNASHNIND 500
           S+++S++ ++  RSK+   +      ++   Y+N ++N N+
Sbjct: 296 SKERSRDRTERERSKEPKIISSLSNNYKYSNYNNYNNNYNN 336


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 447 VPKFEGREYSNASHNINDI 503
           VPKFEG      S+ +N++
Sbjct: 84  VPKFEGEMAEKISNELNEM 102


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +3

Query: 372 KHSRKKSKNMSKGNRSKKEASLMVEVPKFEGREYSNASH 488
           +HS ++ ++  +   S +E  L  ++  F   +YS+A H
Sbjct: 58  EHSTRQVEDFVRLLMSSEELRLFDKIRVFLDEDYSSAEH 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,998
Number of Sequences: 438
Number of extensions: 5476
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)