Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30521
         (866 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex...    30   2.3  
At4g25730.1 68417.m03703 FtsJ-like methyltransferase family prot...    29   3.0  
At5g01720.1 68418.m00090 F-box family protein (FBL3) contains si...    28   7.0  
At4g35770.1 68417.m05078 senescence-associated protein (SEN1) id...    28   7.0  
At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit (...    28   7.0  
At4g11070.2 68417.m01799 WRKY family transcription factor other ...    28   7.0  
At4g11070.1 68417.m01798 WRKY family transcription factor other ...    28   7.0  
At3g58760.1 68416.m06549 ankyrin protein kinase, putative simila...    28   7.0  
At1g64350.1 68414.m07292 transducin family protein / WD-40 repea...    28   9.3  

>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
           extensin family protein contains similarity to disease
           resistance protein GI:3894383 from [Lycopersicon
           esculentum]; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 847

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = +3

Query: 315 NPKQFPKKNNLLTENETDTKHSRKKSKNMSKGNRSKKEASLMVEVPKFE 461
           +PK  P K+      E + KH   K K   K   SK E S   E PK E
Sbjct: 432 SPKPQPPKHESPKPEEPENKHELPKQKESPKPQPSKPEDSPKPEQPKPE 480


>At4g25730.1 68417.m03703 FtsJ-like methyltransferase family protein
           contains Pfam profile: PF01728 FtsJ-like
           methyltransferase
          Length = 821

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/34 (38%), Positives = 25/34 (73%)
 Frame = +3

Query: 333 KKNNLLTENETDTKHSRKKSKNMSKGNRSKKEAS 434
           ++ +L  ++  D   ++KKSKN+SK ++SK++AS
Sbjct: 551 EEGDLGKDDSEDEIANKKKSKNLSKPDKSKQKAS 584


>At5g01720.1 68418.m00090 F-box family protein (FBL3) contains
           similarity to leucine-rich repeats containing F-box
           protein FBL3 GI:5919219 from [Homo sapiens]
          Length = 665

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 349 LQKMRQILNILERKVKICLKVTDLRKKRHLWLKCQNLREENILMPV 486
           L+ +   L++   K+ ICL +TD +   ++ + C NLRE ++   V
Sbjct: 424 LKSISSCLSLSSLKLGICLNITD-KGLSYIGMGCSNLRELDLYRSV 468


>At4g35770.1 68417.m05078 senescence-associated protein (SEN1)
           identical to senescence-associated protein GI:1046270
           from [Arabidopsis thaliana]
          Length = 182

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/63 (20%), Positives = 29/63 (46%)
 Frame = +3

Query: 324 QFPKKNNLLTENETDTKHSRKKSKNMSKGNRSKKEASLMVEVPKFEGREYSNASHNINDI 503
           Q P +  ++  +  ++    +K+   S+GN + +   +   VP    RE + A +   D+
Sbjct: 32  QLPTRRGVIVADLRNSNFRWRKATTTSRGNVAAEAVKIPTSVPVRVARELAQAGYRYLDV 91

Query: 504 FSP 512
            +P
Sbjct: 92  RTP 94


>At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit
           (IRX1) nearly identical to gi:12836997
          Length = 985

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +1

Query: 394 KICLKVTDLRKKRHLWLKCQNLREENILMPVITSTT---SLVPNMVRN 528
           K CL+  + ++ R + L+C N  +EN+   V T T+   S+VP    N
Sbjct: 37  KACLEY-EFKEGRRICLRCGNPYDENVFDDVETKTSKTQSIVPTQTNN 83


>At4g11070.2 68417.m01799 WRKY family transcription factor other
           putative proteins, Arabidopsis thaliana
          Length = 281

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +3

Query: 294 LNPNPVANPKQFPKKNNLLTENETDTKHSRKKSKNMSKGNRSKKEASLMVEVPKFEGREY 473
           L P+P+A+P + P     +T N    +    +SK  +  ++ +K      E  +      
Sbjct: 44  LAPDPLAHPGKVPGSPASITGNPRSEEFFNVRSKEFNLSSKKRKMLPKWTEQVRISPERG 103

Query: 474 SNASHNINDIFS-PKYG 521
               H  +DIFS  KYG
Sbjct: 104 LEGPH--DDIFSWRKYG 118


>At4g11070.1 68417.m01798 WRKY family transcription factor other
           putative proteins, Arabidopsis thaliana
          Length = 313

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +3

Query: 294 LNPNPVANPKQFPKKNNLLTENETDTKHSRKKSKNMSKGNRSKKEASLMVEVPKFEGREY 473
           L P+P+A+P + P     +T N    +    +SK  +  ++ +K      E  +      
Sbjct: 76  LAPDPLAHPGKVPGSPASITGNPRSEEFFNVRSKEFNLSSKKRKMLPKWTEQVRISPERG 135

Query: 474 SNASHNINDIFS-PKYG 521
               H  +DIFS  KYG
Sbjct: 136 LEGPH--DDIFSWRKYG 150


>At3g58760.1 68416.m06549 ankyrin protein kinase, putative similar
           to ankyrin-kinase [Medicago truncatula]
           gi|18700701|gb|AAL78674
          Length = 471

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +2

Query: 641 DRMVRRKNFKVILKPILPKFLLGTK 715
           DR+ R++++KV+L   LP+F L TK
Sbjct: 429 DRIARKRSWKVMLGRCLPRFRLFTK 453


>At1g64350.1 68414.m07292 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           similar to nuclear pore protein SEH1 (SP:P53011)
           [Saccharomyces cerevisiae]
          Length = 326

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 4   NSHGFKCTGLLRYLESKNLEILWLQRCYADS 96
           +S  F CT  +R  ES  ++I+WL   Y D+
Sbjct: 42  SSSTFSCTSKVRVSESSIVKIVWLPSEYGDA 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,649,670
Number of Sequences: 28952
Number of extensions: 403366
Number of successful extensions: 1235
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2028915200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)