Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30520
         (617 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    27   0.095
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    24   1.2  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   3.6  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   8.3  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   8.3  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 27.5 bits (58), Expect = 0.095
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
 Frame = +3

Query: 327 DDEDSFKR---QFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKEL--KKDSVKQKRW 491
           +D+D +K+   QFSK IKLG+  D+      K  E +R   S    E    KD V + + 
Sbjct: 418 EDKDGYKKFYEQFSKNIKLGIHEDSQNR--AKLSELLRYHTSASGDEACSLKDYVSRIKP 475

Query: 492 EQTQAKLAERKNRIKQKKASFIKR 563
            Q        +++ +   +SF++R
Sbjct: 476 NQKHIYYITGESKEQVANSSFVER 499


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 129 CRLSTHHYWCSCLWSYEG 182
           C+  T HY C C + Y G
Sbjct: 76  CQDHTTHYTCHCPYGYTG 93


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 315 SLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKK 452
           ++E+DDED+ ++     I +    + +    KK H  ++  P  KK
Sbjct: 475 AVEEDDEDAIEKPAPVKISVQEVLNRVRKPTKKLH--LKNSPISKK 518


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 203 LRPPSTAPFIAPKT 162
           L PP++ P ++PK+
Sbjct: 106 LTPPNSEPLVSPKS 119


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +3

Query: 168 WSYEGCC*RWPQCSSFHQKIPWL*CRIQ 251
           WS       W  CSSF Q+     C I+
Sbjct: 403 WSVNAGMWMWLSCSSFFQQFFHCYCPIK 430


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,230
Number of Sequences: 336
Number of extensions: 2608
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)