Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30520
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 91 5e-19
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 90 1e-18
06_01_0250 - 1883174-1883503 29 3.9
11_06_0291 + 22008412-22012284 28 5.2
09_03_0096 + 12328116-12329561,12329810-12329852,12332119-123322... 28 5.2
05_04_0084 - 17788077-17789240 28 5.2
10_03_0038 - 7297210-7297248,7297361-7297429,7297524-7297731,729... 28 6.8
03_05_1161 - 30831043-30831151,30831641-30831759,30831880-308319... 28 6.8
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444... 28 6.8
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 91.5 bits (217), Expect = 5e-19
Identities = 43/101 (42%), Positives = 71/101 (70%), Gaps = 6/101 (5%)
Frame = +3
Query: 249 QKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAI 428
++ ++++HR +I+G HVA+YMRS+ +++ + F+ FS+Y+K G+ AD +EA+YKK H AI
Sbjct: 185 KQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKVHAAI 244
Query: 429 RADPS---HKKKE---LKKDSVKQKRWEQTQAKLAERKNRI 533
RADP+ KKE K+ ++K+ +EQ +A L ER N +
Sbjct: 245 RADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNAL 285
Score = 80.6 bits (190), Expect = 9e-16
Identities = 42/84 (50%), Positives = 51/84 (60%)
Frame = +1
Query: 1 LARRLLQRXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMK 180
LARR+L+ +Y VEP D FR LDVGL RTTTG RVFGA+K
Sbjct: 103 LARRVLKLRGLDQEYEGNIEATGEDYYVEPADERR-PFRALLDVGLIRTTTGNRVFGALK 161
Query: 181 GAVDGGLNVPHSIKRFPGYDAESK 252
GA+DGGL++PHS KRF G+ + K
Sbjct: 162 GALDGGLDIPHSDKRFAGFKKDEK 185
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 90.2 bits (214), Expect = 1e-18
Identities = 42/101 (41%), Positives = 71/101 (70%), Gaps = 6/101 (5%)
Frame = +3
Query: 249 QKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAI 428
++ ++++HR +I+G HVA+YMRS+ +++ + F+ FS+Y+K G+ AD +E++YKK H AI
Sbjct: 185 KQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKVHAAI 244
Query: 429 RADPS---HKKKE---LKKDSVKQKRWEQTQAKLAERKNRI 533
RADP+ KKE K+ ++K+ +EQ +A L ER N +
Sbjct: 245 RADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNAL 285
Score = 79.8 bits (188), Expect = 2e-15
Identities = 42/84 (50%), Positives = 50/84 (59%)
Frame = +1
Query: 1 LARRLLQRXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMK 180
LARR+L +Y VEP D FR LDVGL RTTTG RVFGA+K
Sbjct: 103 LARRVLTLRGLDQEYEGNVEATGEDYYVEPADERR-PFRALLDVGLIRTTTGNRVFGALK 161
Query: 181 GAVDGGLNVPHSIKRFPGYDAESK 252
GA+DGGL++PHS KRF G+ + K
Sbjct: 162 GALDGGLDIPHSDKRFAGFKKDEK 185
>06_01_0250 - 1883174-1883503
Length = 109
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/79 (26%), Positives = 41/79 (51%)
Frame = +3
Query: 327 DDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWEQTQA 506
D+ D K + K + G+ D + ++ +KAH H+K+ L++ ++ + R +Q QA
Sbjct: 3 DNRDGLKYVYCK--ECGID-DWVPSVQEKAHAK-----QHRKQNLERMNLLRLRAQQLQA 54
Query: 507 KLAERKNRIKQKKASFIKR 563
K A ++ +K S K+
Sbjct: 55 KKAMEASKAAKKANSEAKK 73
>11_06_0291 + 22008412-22012284
Length = 1290
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 408 KKAHEAIRADPSHKKKELKKD-SVKQKRWEQTQAKLAERKNRIKQKK 545
+K E + +P H+K+E KK+ VK++ ++ Q K E + ++K+
Sbjct: 449 EKGGEERKEEPHHEKQEHKKEKEVKEEERKEEQNKEKEEREGTEEKQ 495
>09_03_0096 +
12328116-12329561,12329810-12329852,12332119-12332237,
12333326-12333853
Length = 711
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +3
Query: 393 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWEQTQAKLAERKNRIKQK 542
+EA A E+ R KKE KKDS + + W++ +AKL E K K
Sbjct: 415 MEAAKLSASESERQCQKLVKKE-KKDSKRLEMWDRQKAKLQEDIAECKTK 463
>05_04_0084 - 17788077-17789240
Length = 387
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = +3
Query: 408 KKAHEAIRADPSHKKKELKKDSVKQKR----WEQTQAKLAERKNRIKQKK 545
+ A E + DP K+ +KKD +Q++ W++ Q K+ +++ + +Q K
Sbjct: 300 RAAGEKVHDDPKLIKESMKKDKKRQQKHAEQWKERQ-KMVDKQKKERQSK 348
>10_03_0038 -
7297210-7297248,7297361-7297429,7297524-7297731,
7297829-7297911,7298859-7298998,7299132-7299183
Length = 196
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -2
Query: 553 KEAFFCLILFFLSANLACVCSQRFCLTESFFNSFFLW 443
+EAF C+ + N AC+ E+FFN W
Sbjct: 67 QEAFRCITRSYYRGNAACLLVYDITRRETFFNHLASW 103
>03_05_1161 -
30831043-30831151,30831641-30831759,30831880-30831906,
30832117-30832158,30832293-30832392,30832481-30832545,
30832619-30832694,30832878-30832939,30833248-30833253,
30834704-30834782,30834890-30834957
Length = 250
Score = 27.9 bits (59), Expect = 6.8
Identities = 24/101 (23%), Positives = 47/101 (46%)
Frame = +3
Query: 246 IQKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEA 425
IQK + + L++ E ++ LEQ E+S K S+ +L +E+I + +
Sbjct: 114 IQKCQKHLMGEDLESLNLKE-LQQLEQQLENSLKHIRSRKSQL-----MLESINELQRKE 167
Query: 426 IRADPSHKKKELKKDSVKQKRWEQTQAKLAERKNRIKQKKA 548
+K E +K +Q +W+QTQ + + + ++A
Sbjct: 168 KSLQEENKLVEKQKVQKQQVQWDQTQPQTSSSSSSFMMREA 208
>02_01_0598 +
4440018-4440070,4440627-4440693,4440794-4440926,
4441075-4441120,4442470-4442521,4442601-4442753,
4443338-4443457,4443549-4443714,4443822-4443934,
4444049-4444120,4444992-4445213,4445270-4445317,
4445639-4445697,4445809-4445887,4445982-4446119,
4446327-4446551,4446643-4447430,4447548-4447723,
4447911-4448169,4448646-4448707,4451055-4451212,
4451618-4451743,4452197-4452260,4452386-4452494,
4452607-4452760,4453055-4453178,4453257-4453333,
4453442-4453494,4453673-4453727,4453833-4454021
Length = 1379
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3
Query: 372 LGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWEQ 497
LG++ A+EA YK+++E+ A+P KK + +W +
Sbjct: 748 LGLSHYAMEAGYKRSNESTPAEPVPSKKPKVDPVLPASKWSR 789
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,583,408
Number of Sequences: 37544
Number of extensions: 283179
Number of successful extensions: 859
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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