Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30520
(617 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso... 92 3e-19
At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S... 88 4e-18
At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containi... 35 0.038
At2g46790.2 68415.m05838 pseudo-response regulator 9 (APRR9) / t... 35 0.050
At2g46790.1 68415.m05837 pseudo-response regulator 9 (APRR9) / t... 35 0.050
At2g46670.1 68415.m05824 pseudo-response regulator, putative / t... 35 0.050
At4g40020.1 68417.m05666 hypothetical protein 33 0.20
At1g03780.2 68414.m00358 targeting protein-related similar to mi... 33 0.20
At1g14500.1 68414.m01719 ankyrin repeat family protein contains ... 31 0.61
At1g14480.1 68414.m01717 ankyrin repeat family protein contains ... 31 0.61
At2g10608.1 68415.m01121 hypothetical protein 30 1.1
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic... 29 1.9
At4g33690.1 68417.m04785 expressed protein 29 2.5
At1g67590.1 68414.m07700 remorin family protein contains Pfam do... 29 2.5
At5g51340.1 68418.m06366 expressed protein 29 3.3
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai... 29 3.3
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos... 28 4.3
At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containi... 28 4.3
At3g05060.1 68416.m00549 SAR DNA-binding protein, putative stron... 28 5.7
At3g27025.1 68416.m03381 expressed protein 27 7.5
At1g56660.1 68414.m06516 expressed protein 27 7.5
At1g29000.1 68414.m03546 heavy-metal-associated domain-containin... 27 7.5
At1g09810.1 68414.m01101 expressed protein contains Pfam profile... 27 7.5
At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7) 27 10.0
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 27 10.0
At3g54570.1 68416.m06038 calmodulin-binding protein-related cont... 27 10.0
>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
protein L5, rice
Length = 301
Score = 91.9 bits (218), Expect = 3e-19
Identities = 42/98 (42%), Positives = 66/98 (67%)
Frame = +3
Query: 249 QKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAI 428
++ +AE+HR +I+G HV+ YM+ L +D+ + + FS YIK GV A++IE +YKK H AI
Sbjct: 187 KQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYKKVHAAI 246
Query: 429 RADPSHKKKELKKDSVKQKRWEQTQAKLAERKNRIKQK 542
RA+P+HKK E K + KR+ + ERKN++ ++
Sbjct: 247 RAEPNHKKTE-KSAPKEHKRYNLKKLTYEERKNKLIER 283
Score = 82.6 bits (195), Expect = 2e-16
Identities = 42/84 (50%), Positives = 54/84 (64%)
Frame = +1
Query: 1 LARRLLQRXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMK 180
LARR+L+ +++VEP D+ FR LDVGL RTTTG RVFGA+K
Sbjct: 105 LARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRR-PFRALLDVGLIRTTTGNRVFGALK 163
Query: 181 GAVDGGLNVPHSIKRFPGYDAESK 252
GA+DGGL++PHS KRF G+ E+K
Sbjct: 164 GALDGGLDIPHSDKRFAGFHKENK 187
>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
ribosomal protein L5 GB:P49625 from [Oryza sativa]
Length = 301
Score = 88.2 bits (209), Expect = 4e-18
Identities = 41/98 (41%), Positives = 65/98 (66%)
Frame = +3
Query: 249 QKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAI 428
++ +AE+HR +I+G HV+ YM+ L +D+ + + FS YIK GV A++IE +YKK H AI
Sbjct: 187 KQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYKKVHAAI 246
Query: 429 RADPSHKKKELKKDSVKQKRWEQTQAKLAERKNRIKQK 542
RADP + KK +K + KR+ + ERKN++ ++
Sbjct: 247 RADP-NPKKTVKPAPKQHKRYNLKKLTYEERKNKLIER 283
Score = 82.6 bits (195), Expect = 2e-16
Identities = 42/84 (50%), Positives = 54/84 (64%)
Frame = +1
Query: 1 LARRLLQRXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMK 180
LARR+L+ +++VEP D+ FR LDVGL RTTTG RVFGA+K
Sbjct: 105 LARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRR-PFRALLDVGLIRTTTGNRVFGALK 163
Query: 181 GAVDGGLNVPHSIKRFPGYDAESK 252
GA+DGGL++PHS KRF G+ E+K
Sbjct: 164 GALDGGLDIPHSDKRFAGFHKENK 187
>At5g60960.1 68418.m07647 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 521
Score = 35.1 bits (77), Expect = 0.038
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 429 RADPSHKKKELKKDSVKQKRWEQTQAKLAERKNRIKQKKASFIKR 563
R DP KK+ K+ K+ E K A +K R+KQ SF+K+
Sbjct: 468 RVDPRFMKKKTKEVDSNVKKRETLPEKTARKKKRLKQINMSFVKK 512
>At2g46790.2 68415.m05838 pseudo-response regulator 9 (APRR9) /
timing of CAB expression 1-like protein (TL1) identical
to pseudo-response regulator 9 GI:10281000 from
[Arabidopsis thaliana], timing of CAB expression 1-like
protein [Arabidopsis thaliana] GI:9247022; contains Pfam
profile PF00072: Response regulator receiver domain;
identical to cDNA timing of CAB expression 1-like
protein GI:9247021
Length = 351
Score = 34.7 bits (76), Expect = 0.050
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +3
Query: 393 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWEQTQAKLAERKNRIKQKKASFIKR 563
+EA + +E I S +K +++S KQ RW ++Q + A K R+K+K F K+
Sbjct: 264 VEAGSQSTNEGIAGQSSSTEKPKEEESAKQ-RWSRSQREAALMKFRLKRKDRCFDKK 319
>At2g46790.1 68415.m05837 pseudo-response regulator 9 (APRR9) /
timing of CAB expression 1-like protein (TL1) identical
to pseudo-response regulator 9 GI:10281000 from
[Arabidopsis thaliana], timing of CAB expression 1-like
protein [Arabidopsis thaliana] GI:9247022; contains Pfam
profile PF00072: Response regulator receiver domain;
identical to cDNA timing of CAB expression 1-like
protein GI:9247021
Length = 468
Score = 34.7 bits (76), Expect = 0.050
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +3
Query: 393 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWEQTQAKLAERKNRIKQKKASFIKR 563
+EA + +E I S +K +++S KQ RW ++Q + A K R+K+K F K+
Sbjct: 381 VEAGSQSTNEGIAGQSSSTEKPKEEESAKQ-RWSRSQREAALMKFRLKRKDRCFDKK 436
>At2g46670.1 68415.m05824 pseudo-response regulator, putative /
timing of CAB expression 1-like protein, putative
similar to pseudo-response regulator 9 [Arabidopsis
thaliana] GI:10281000, timing of CAB expression 1-like
protein [Arabidopsis thaliana] GI:9247022
Length = 183
Score = 34.7 bits (76), Expect = 0.050
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +3
Query: 393 IEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWEQTQAKLAERKNRIKQKKASFIKR 563
+EA + +E I S +K +++S KQ RW ++Q + A K R+K+K F K+
Sbjct: 96 VEAGSQSTNEGIAGQSSSTEKPKEEESAKQ-RWSRSQREAALMKFRLKRKDRCFDKK 151
>At4g40020.1 68417.m05666 hypothetical protein
Length = 615
Score = 32.7 bits (71), Expect = 0.20
Identities = 24/89 (26%), Positives = 47/89 (52%)
Frame = +3
Query: 297 VAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSV 476
++E ++E++ + S RQ S + + +E + KK E + + + K+ KK+S
Sbjct: 365 LSEIEVAMEEEKQRSLNRQES------MPKEVVEVVEKKIEEKEKKEEKKENKKEKKESK 418
Query: 477 KQKRWEQTQAKLAERKNRIKQKKASFIKR 563
K+K+ E ++ K E K + +Q +F KR
Sbjct: 419 KEKK-EHSEKK--EDKEKKEQTHQNFDKR 444
>At1g03780.2 68414.m00358 targeting protein-related similar to
microtubule-associated protein / targeting protein for
Xklp2 ((TPX2) GI:8926138) {Homo sapiens}; similar to
Restricted expression proliferation associated protein
100 (p100) (Differentially expressed in lung cells 2)
(DIL-2) (Targeting protein for Xklp2) (C20orf1 protein)
(C20orf2 protein) (Protein FLS353)(SP:Q9ULW0) {Homo
sapiens}
Length = 725
Score = 32.7 bits (71), Expect = 0.20
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 417 HEAI-RADPSHKKKELKKDSVKQKRWEQTQAKLAERKNRIKQKKASFI 557
H A+ RAD HK KE K++ K+ R E AK+ E + +KQ + + +
Sbjct: 620 HRAVERADFDHKIKE-KENQYKRYREESEAAKMVEEERALKQMRKTMV 666
>At1g14500.1 68414.m01719 ankyrin repeat family protein contains
Pfam domain, PF00023: Ankyrin repeat
Length = 436
Score = 31.1 bits (67), Expect = 0.61
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -2
Query: 559 LMKEAFFCLILFFLSANLACVCSQRFCLTE--SFFNSFFLWDGSARMASWAFL*MASIA 389
+MK+ FF ++ + C FCL S F ++F W G++ S+A L MA I+
Sbjct: 325 VMKQTFFIVLWVSNTIGFCCALLYTFCLLPIGSLFTTWFFWIGASLGVSYA-LAMAIIS 382
>At1g14480.1 68414.m01717 ankyrin repeat family protein contains
Pfam domain, PF00023: Ankyrin repeat
Length = 412
Score = 31.1 bits (67), Expect = 0.61
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -2
Query: 583 ASA*ACSLLMKEAFFCLILFFLSANLACVCSQRFCLTE--SFFNSFFLWDGSARMASWAF 410
A+A A S++MK+ FF L+ + C FCL F +F + G+ S+A
Sbjct: 293 ANANAGSVVMKQTFFILLWISNTVGFCCAVFYTFCLIPLGQLFTIWFFYIGTCLCISYA- 351
Query: 409 L*MASIA 389
L MA I+
Sbjct: 352 LAMAVIS 358
>At2g10608.1 68415.m01121 hypothetical protein
Length = 135
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = -2
Query: 532 ILFFLSANLACVCSQRFCLTESFFN-SFFLWDGSARMASWAFL*MASIASAVTPSFMY 362
+L+ + ++A VC + FCL S+ S +L+ GS R+ ++F+ + S S++ +F Y
Sbjct: 49 LLYSFNVDVAIVCVEVFCLASSYVEASMWLFCGSVRLL-FSFV-VGSAYSSLQQNFHY 104
>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
Nicotiana tabacum, EMBL:AB009883
Length = 1008
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +3
Query: 396 EAIYKKAHEAIRADPSHKKKELKKDS----VKQKRWEQTQAKLAERKNRIKQKKASFIK 560
E K+A+E+ + + KK E KK S QK ++ K +RKN +KKA ++
Sbjct: 747 EETQKEANESTKKERKRKKSESKKQSDGEEETQKEPSESTKKERKRKNPESKKKAEAVE 805
>At4g33690.1 68417.m04785 expressed protein
Length = 281
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 396 EAIYKKAHEAIRADPSHKKKELKKDSVKQKRWEQTQAK 509
E +YK+AH R HKKK KK K+K+ ++ + K
Sbjct: 243 EEVYKRAH---RKRKEHKKKLSKKHKSKEKKRDRKKRK 277
>At1g67590.1 68414.m07700 remorin family protein contains Pfam
domain, PF03763: Remorin, C-terminal region
Length = 347
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +3
Query: 417 HEAIRADPSHKKKELKKDSVKQKRWEQTQAKLAERKNRIKQKKAS 551
HE +A+ KK E+K + +K + E+ KLA K ++++A+
Sbjct: 261 HEKRKAEMEMKKMEVKAERMKARAEEKLANKLAATKRIAEERRAN 305
>At5g51340.1 68418.m06366 expressed protein
Length = 726
Score = 28.7 bits (61), Expect = 3.3
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = +3
Query: 447 KKKELKKDSVKQKRWEQTQAKLAERKNRI 533
K E++ + ++K+W++ Q++LAE + I
Sbjct: 628 KGNEMENEEFRKKKWDELQSRLAEARGSI 656
>At1g44910.1 68414.m05146 FF domain-containing protein / WW
domain-containing protein contains Pfam profiles PF01846:
FF domain, PF00397: WW domain
Length = 946
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/79 (20%), Positives = 38/79 (48%)
Frame = +3
Query: 327 DDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWEQTQA 506
++ ++ + + G+ + I ++ +KA E R K ++ K+ K+KR ++ +
Sbjct: 765 EESQEYRSIGDESVSQGLFEEYITSLQEKAKEKERKRDEEKVRKEKERDEKEKRKDKDKE 824
Query: 507 KLAERKNRIKQKKASFIKR 563
+ + + R K+K KR
Sbjct: 825 RREKEREREKEKGKERSKR 843
>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
identical to CIP1 (GI:836950) [Arabidopsis thaliana]
Length = 1305
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = +3
Query: 336 DSFKRQFSKYIK-LGVTADAIEAIYKKAHEAIRADPSHKK---KELKKDSVKQKRWEQTQ 503
++ KR S +K L ++ E K+ ++ + + KK +++ + S+K KR E T
Sbjct: 565 EAHKRDSSSQVKELEARVESAEEQVKELNQNLNSSEEEKKILSQQISEMSIKIKRAESTI 624
Query: 504 AKLAERKNRIKQKKA 548
+L+ R+K A
Sbjct: 625 QELSSESERLKGSHA 639
>At1g15290.1 68414.m01830 tetratricopeptide repeat (TPR)-containing
protein ESTs gb|F20110 and gb|F20109 come from this
gene; contains Pfam profile PF00515: TPR Domain
Length = 1558
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +3
Query: 246 IQKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVT 383
+ E HR H G V L+ DD +S++ + +K+ +T
Sbjct: 496 LNSLRVEFHRPHSVGTSVENQPTQLDWDDLESYRCIIQELVKINLT 541
>At3g05060.1 68416.m00549 SAR DNA-binding protein, putative strong
similarity to SAR DNA-binding protein-1 [Pisum sativum]
GI:3132696; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 533
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 405 YKKAHEAIRADPSHKKKE--LKKDSVKQKRWEQTQAKLAERKNRIKQKKA 548
Y A +++ + S K +E KKD K+K+ E+ + + E + K+KKA
Sbjct: 436 YNTAADSLLGETSAKSEEPSKKKDKKKKKKVEEEKPEEEEPSEKKKKKKA 485
>At3g27025.1 68416.m03381 expressed protein
Length = 299
Score = 27.5 bits (58), Expect = 7.5
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
Frame = +3
Query: 351 QFSKYIKLGVTADAIEAIYKKAHEA---IRADP-----SHKKKELKKD 470
Q YI+ T DAI+ ++KK H A R D S KKK+LKK+
Sbjct: 183 QGEPYIEKHSTRDAIKRVFKKLHGASSKTRNDDEDDSMSKKKKDLKKN 230
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 27.5 bits (58), Expect = 7.5
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +3
Query: 318 LEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKEL-KKDSVKQKRWE 494
LE++ E K+ + + G +A +K HE + + ++E KK+ K+K
Sbjct: 126 LEEEKEGKKKKNKKEKDESGPEEKNKKADKEKKHEDVSQEKEELEEEDGKKNKKKEKDES 185
Query: 495 QTQAKLAERKNRIKQKKAS 551
T+ K + K KQK+ S
Sbjct: 186 GTEEKKKKPKKEKKQKEES 204
>At1g29000.1 68414.m03546 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 287
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 381 TADAIEAIYKKAHEAIRADPSHKKKELKKDSV-KQKRWEQTQAKLAERKNRIKQKK 545
+A + I KK H+ S ++E KK+ K+K+ E+ + K + K + ++KK
Sbjct: 160 SAKLLAYIKKKVHKHAEIISSKTEEEKKKEEEDKKKKEEEDKKKKEDEKKKEEEKK 215
>At1g09810.1 68414.m01101 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 428
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 354 FSKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWE 494
F KY + D ++ Y++ +++RA HK L+ D K+K ++
Sbjct: 330 FKKYSAVTFLLDDMD-FYEEREKSLRAKKEHKPATLRMDLFKEKDYD 375
>At5g65390.1 68418.m08224 arabinogalactan-protein (AGP7)
Length = 130
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = -1
Query: 197 PPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLS 93
PP+ P AP T P V PTS +AP P S
Sbjct: 41 PPAATP--APTTTPPPAVSPAPTSSPPSSAPSPSS 73
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9 (SP:Q9NSI6)
{Homo sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (4 copies)
Length = 1677
Score = 27.1 bits (57), Expect = 10.0
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +3
Query: 315 SLEQDD-EDSFKRQFSKYIK--LGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQK 485
S E DD ++S +R K K G+ + + K+ + + PS+KK+ K S +++
Sbjct: 821 SYEDDDHQNSLRRSKRKKHKKEAGIMTSSGRRVKKRNFDELEGAPSNKKRTRKSRSGRKE 880
Query: 486 RWEQTQAKLAERKNRIKQKKA 548
++ + R R + A
Sbjct: 881 SKRKSSKSKSSRPRRAAARNA 901
>At3g54570.1 68416.m06038 calmodulin-binding protein-related
contains similarity to potato calmodulin-binding protein
PCBP GI:17933110 from [Solanum tuberosum]
Length = 417
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 568 CSLLMKEAFFCLILFFLSANLACVCSQRFCLTESFFNSFF 449
CS L+K + F L F S ++ VC +C + +S F
Sbjct: 124 CSSLLKNSKFTEDLMFTSPHILKVCPYTYCSLNAHLHSQF 163
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,838,784
Number of Sequences: 28952
Number of extensions: 232704
Number of successful extensions: 828
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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