Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30519
         (717 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    24   1.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   1.4  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   2.5  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           23   2.5  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   3.3  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   4.3  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   4.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   4.3  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   4.3  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   5.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.6  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   7.6  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   7.6  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    21   7.6  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   7.6  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -1

Query: 174 VQQISTLSWQSSSPNLTSSTPHPVTLALLTSTPSLFLLHK**GT-HLQDSP 25
           V++ S L    S+P LT ++P PV++   TST S           HL+DSP
Sbjct: 137 VEKSSKLK-NKSAPILTKTSPTPVSINNNTSTSSSASSPSVTAAPHLRDSP 186


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +2

Query: 179 PITEPVPKPQPDPSKLKGCGYRNPM--GSE*P-SPEGWVRR--LSSASSPG 316
           P+T P P P   P  +   GY +PM  GS  P SP G + R  LS +S  G
Sbjct: 116 PLT-PSPGPPSHPYTVISNGYSSPMSSGSYDPYSPNGKIGREDLSPSSLNG 165


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 188 EPVPKPQPDPSK 223
           EPVP P+P P++
Sbjct: 394 EPVPTPEPQPTQ 405


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = +2

Query: 500 SRKNHTRRFQHEKLKNDVALLRMHAPFQPRRAHQHGFLPSPGPGGIAFDTSKKLAVAQT 676
           +R+N   R + +++ N  A LR H P     A    F P  GP       SKKL+  +T
Sbjct: 88  ARRNARERNRVKQVNNGFATLRQHIPASVAAA----FAPQ-GP-STGRGASKKLSKVET 140


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 140 EDCQESVEICCTNP 181
           +DC E V+ C TNP
Sbjct: 94  KDCGEYVDWCSTNP 107


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 259 RPHGVPVAASLQLRGVRLRLW 197
           RP  + +AASL L   ++++W
Sbjct: 31  RPRRIEIAASLDLTERQVKVW 51


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 387 HDWRSHRLQVRPGQFESKSRRMGHP 461
           H    HR+Q++P    S SR +  P
Sbjct: 13  HHLEPHRMQIKPQSPSSSSRILDIP 37


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 387 HDWRSHRLQVRPGQFESKSRRMGHP 461
           H    HR+Q++P    S SR +  P
Sbjct: 13  HHLEPHRMQIKPQSPSSSSRILDIP 37


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 259 RPHGVPVAASLQLRGVRLRLW 197
           RP  + +AASL L   ++++W
Sbjct: 162 RPRRIEIAASLDLTERQVKVW 182


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/41 (24%), Positives = 17/41 (41%)
 Frame = +2

Query: 434 EQEPENGTPRPSRKCWTTK*DSSRKNHTRRFQHEKLKNDVA 556
           EQ+  N  P  S   W     ++  NH R+      +N+ +
Sbjct: 361 EQQWRNNQPSTSNNRWHNNNGNNSNNHWRKNNPNDNRNNTS 401


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 29   ESCKCVPYYLCNK 67
            +   C  YYLCN+
Sbjct: 2245 DDTNCAQYYLCNQ 2257


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +3

Query: 6  ACLRIRTGNLANASPTIC 59
          +C+ +  G+  N++P+IC
Sbjct: 21 SCIAVGVGSGRNSAPSIC 38


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 162 STLSWQSSSPNLTSSTPHP 106
           S LS   ++PN +S++P+P
Sbjct: 56  SLLSPSGNTPNKSSTSPYP 74


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 348 VRWSRSPDTSSSRHDWRSHRL 410
           V+  R PD  S R  W+S R+
Sbjct: 35  VQGVRGPDFRSLRFSWKSARV 55


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 348 VRWSRSPDTSSSRHDWRSHRL 410
           V+  R PD  S R  W+S R+
Sbjct: 35  VQGVRGPDFRSLRFSWKSARV 55


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,599
Number of Sequences: 336
Number of extensions: 4879
Number of successful extensions: 29
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)