Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30519
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    30   0.38 
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    28   1.2  
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    28   1.5  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.7  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   6.2  

>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -1

Query: 222 FEGSGCGFGTGSVMGLVQQIS---TLSWQSSSPNLTSSTPHPVTLALLTST-PSLF 67
           F  SG    T  ++  + Q+S   T SW SSS  LT +    VT A+ T+  P +F
Sbjct: 151 FGASGITSNTDPIVDEIDQMSARFTFSWDSSSMQLTLTEGMAVTTAVYTNAIPQIF 206


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 581 QPRRAHQHGFLPSPGPGGIAFDTSKKLAVAQTASGERNLF 700
           +P R  Q G + S G     FD   +++VAQT S +  +F
Sbjct: 344 EPYRNRQAGSISSEGTDSRFFDVENQVSVAQTPSVKPEMF 383


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 331 DALNESYAGVGVLIHPQVVMTGAHIAYKYAPGNLRA 438
           + L ++   V   IHPQV++ G  IA K A   LRA
Sbjct: 104 ELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRA 139


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 340 SKRPAEPQPRGTRRTEPPYPPLR*WSLRPH 251
           + RP      G   ++ PYPP R  S RP+
Sbjct: 54  NSRPVSSSGSGNAYSQAPYPPARPTSQRPN 83


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 176 NPITEPVPKPQPDPSKLKGCG 238
           NPI  PVP+P+ D ++ K CG
Sbjct: 579 NPI--PVPRPRVDLTQCKSCG 597


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,297,240
Number of Sequences: 5004
Number of extensions: 74485
Number of successful extensions: 323
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)