Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30519
(717 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 30 1.4
Z72506-2|CAA96621.1| 434|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z72506-1|CAA96618.1| 432|Caenorhabditis elegans Hypothetical pr... 29 3.3
U41508-2|AAN39665.2| 552|Caenorhabditis elegans Set (trithorax/... 29 3.3
Z82263-4|CAB62794.1| 316|Caenorhabditis elegans Hypothetical pr... 28 5.8
U41106-1|AAA82409.1| 347|Caenorhabditis elegans Hypothetical pr... 28 5.8
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 28 5.8
Z37983-4|CAA86057.1| 803|Caenorhabditis elegans Hypothetical pr... 28 7.7
U50301-3|AAM29676.1| 370|Caenorhabditis elegans Hypothetical pr... 28 7.7
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 28 7.7
>Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical
protein C15C6.3 protein.
Length = 541
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 355 QRTIRSKRPAEPQPRGTRRTEPPYPP 278
Q+ ++ K P+ P R R+ PPYPP
Sbjct: 285 QQHMKRKTPSSPSRRSRSRSPPPYPP 310
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/78 (28%), Positives = 34/78 (43%)
Frame = +1
Query: 412 KYAPGNLRARAGEWDTQTIKEMLDHQVRLVEEKSYTKISTRKAQERRGAPADARALSTSP 591
K P LR A E + + LD ++ ++ + TK + RK E R D A S
Sbjct: 191 KVDPKPLRLLAKEIADRETRNPLDPEIPILTRELATKRAERKNSEWRKKAHDQNAKRKSD 250
Query: 592 STSTWILAFPGTRGDSFR 645
+S W L T+G ++
Sbjct: 251 VSSFWKLIKGVTKGRQYK 268
>Z72506-2|CAA96621.1| 434|Caenorhabditis elegans Hypothetical
protein F07A5.1b protein.
Length = 434
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 497 SSRKNHTRRFQHEKLKNDVALLRMHAPFQPRRAHQHGFL 613
S + N + F+ K K D + MH F+ RRAH+ G+L
Sbjct: 143 SGKINSEKTFEKTKEKVDRIVNYMHDHFKFRRAHKMGYL 181
>Z72506-1|CAA96618.1| 432|Caenorhabditis elegans Hypothetical
protein F07A5.1a protein.
Length = 432
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 497 SSRKNHTRRFQHEKLKNDVALLRMHAPFQPRRAHQHGFL 613
S + N + F+ K K D + MH F+ RRAH+ G+L
Sbjct: 143 SGKINSEKTFEKTKEKVDRIVNYMHDHFKFRRAHKMGYL 181
>U41508-2|AAN39665.2| 552|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 20,
isoform b protein.
Length = 552
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 400 HIAYKYAPGNLRARAGEWDTQTIKEMLDHQVRLVEEKSYTKI 525
HI YK+A L R T+TI+ D Q++ + EK Y +I
Sbjct: 112 HI-YKHAKAALAKRRVAIPTETIQRATDLQIKQLAEKEYERI 152
>Z82263-4|CAB62794.1| 316|Caenorhabditis elegans Hypothetical
protein C47A4.3 protein.
Length = 316
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 261 SDPMGFL*PHPFNFEGSGCGFGTGSVMGLVQQ 166
+DP+ L N G+GCGFG SV+ L +
Sbjct: 207 ADPISGLSGFMNNQRGAGCGFGRDSVLNLCSE 238
>U41106-1|AAA82409.1| 347|Caenorhabditis elegans Hypothetical
protein W06A11.4 protein.
Length = 347
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 358 LQRTIRSKRPAEPQPRGTRRTEPPYPPL 275
+Q+TI S +PA P P +++ P PP+
Sbjct: 229 VQQTINSAQPAAPNPIAQYKSKMPPPPI 256
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +2
Query: 176 NPITEPVPKPQPDPSKLKGCGYRNPMGSE*PSPEG 280
NPI +P P P P P G N PSP G
Sbjct: 933 NPIPKPNPGPGPGPPSPNGPSDPNKPSPNGPSPNG 967
>Z37983-4|CAA86057.1| 803|Caenorhabditis elegans Hypothetical
protein B0393.4 protein.
Length = 803
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 161 EICCTNPITEPVPKPQPDP 217
++ T P+ EPVP+P P+P
Sbjct: 107 KVAVTLPVPEPVPEPVPEP 125
>U50301-3|AAM29676.1| 370|Caenorhabditis elegans Hypothetical
protein F20D6.8 protein.
Length = 370
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 343 RSKRPAEPQPRGTRRTEPPYPP 278
R P+ P P G RR+ PP PP
Sbjct: 59 RRSLPSTPLPNGHRRSLPPTPP 80
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 213 SGCGFG-TGSVMGLVQQISTLSWQSSSPNLTSSTPHPVTLALLTST 79
SG GF TG + QI L SS+P++ P P T A TST
Sbjct: 1173 SGTGFSFTGDTQQVADQIG-LKMASSNPSVYCPPPVPSTAAPSTST 1217
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,959,715
Number of Sequences: 27780
Number of extensions: 465996
Number of successful extensions: 1957
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1871
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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