Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30519
(717 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55560.1 68414.m06359 multi-copper oxidase type I family prot... 32 0.33
At3g13400.1 68416.m01685 multi-copper oxidase type I family prot... 32 0.44
At4g38140.1 68417.m05385 zinc finger (C3HC4-type RING finger) fa... 31 0.58
At1g55570.1 68414.m06360 multi-copper oxidase type I family prot... 30 1.3
At3g13390.1 68416.m01684 multi-copper oxidase type I family prot... 30 1.8
At4g17245.1 68417.m02593 zinc finger (C3HC4-type RING finger) fa... 29 3.1
At3g55940.1 68416.m06216 phosphoinositide-specific phospholipase... 28 5.4
At1g58350.1 68414.m06637 expressed protein contains Pfam profile... 28 5.4
At5g19520.1 68418.m02325 mechanosensitive ion channel domain-con... 28 7.1
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea... 28 7.1
At5g41430.1 68418.m05032 zinc finger (C3HC4-type RING finger) fa... 27 9.4
At4g37160.1 68417.m05261 multi-copper oxidase type I family prot... 27 9.4
At3g58050.1 68416.m06471 expressed protein 27 9.4
At3g51650.1 68416.m05664 expressed protein 27 9.4
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex... 27 9.4
At3g08510.1 68416.m00988 phosphoinositide-specific phospholipase... 27 9.4
>At1g55560.1 68414.m06359 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 549
Score = 32.3 bits (70), Expect = 0.33
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = -1
Query: 231 PFNFEGSGCGFGTGSVMGLVQQISTLSWQSSSPNLTSSTPHPVTLALLTSTPSLFLL 61
P+ F +GT S +G+ Q++ ++ Q PNL S++ + V + + FLL
Sbjct: 24 PYFFHTWNVTYGTASPLGVPQKVILINGQFPGPNLNSTSNNNVVINVFNHLDEPFLL 80
>At3g13400.1 68416.m01685 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 551
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = -1
Query: 201 FGTGSVMGLVQQISTLSWQSSSPNLTSSTPHPVTLALLTSTPSLFLL 61
+GT + +G+ QQ+ ++ Q PNL S++ + V + + + FLL
Sbjct: 35 YGTAAPLGIPQQVILINGQFPGPNLNSTSNNNVVINVFNNLDEPFLL 81
>At4g38140.1 68417.m05385 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 145
Score = 31.5 bits (68), Expect = 0.58
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 32 SCKCVPYYLCNKNNEGVDVNNASVTGWGVLDVRFGEEDCQESVEICC 172
+C C+P KN D ++ G+ ++ V FG+++ +E EICC
Sbjct: 20 TCVCIPLGRLKKNGGDADAHDDD--GYNLVGVMFGDKEKEE--EICC 62
>At1g55570.1 68414.m06360 multi-copper oxidase type I family protein
nearly identical to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Multicopper
oxidase domain PF00394
Length = 555
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = -1
Query: 201 FGTGSVMGLVQQISTLSWQSSSPNLTSSTPHPVTLALLTSTPSLFLL 61
+GT S +G+ QQ+ ++ Q PN+ S++ + V + + + FL+
Sbjct: 37 YGTASPLGVPQQVILINGQFPGPNINSTSNNNVIVNVFNNLDEPFLI 83
>At3g13390.1 68416.m01684 multi-copper oxidase type I family protein
nearly identical to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Multicopper
oxidase domain PF00394
Length = 554
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = -1
Query: 201 FGTGSVMGLVQQISTLSWQSSSPNLTSSTPHPVTLALLTSTPSLFLL 61
+GT S +G+ QQ+ ++ Q PN+ S++ + V + + + FLL
Sbjct: 36 YGTVSPLGVPQQVILINGQFPGPNVNSTSNNNVIINVFNNLDEPFLL 82
>At4g17245.1 68417.m02593 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 166
Score = 29.1 bits (62), Expect = 3.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 167 CCTNPITEPVPKPQPD 214
CC P+ + VPKP PD
Sbjct: 60 CCLRPVLQHVPKPDPD 75
>At3g55940.1 68416.m06216 phosphoinositide-specific phospholipase C,
putative similar to phosphoinositide specific
phospholipase C GI:857374 from [Arabidopsis thaliana]
Length = 584
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 316 PRGTRRTEPPYPPLR*WSLRPHGVPVAASLQLRGVRLRLW 197
P+GTR T Y PL WS HG + A ++G+ LW
Sbjct: 382 PKGTRITSSNYNPLIAWS---HGAQMVA-FNMQGLGRSLW 417
>At1g58350.1 68414.m06637 expressed protein contains Pfam profile
PF05057: Protein of unknown function (DUF676);
supporting cDNA gi|6520166|dbj|AB028199.1|
Length = 794
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 322 ALLDALNESYAGVGVLIHPQVVMTGAHIAYKYAPGNLRARAGEWDTQTIKE-MLDHQVRL 498
A+ D+L E Y +H + ++G H+ Y Y+ +L +G W + +K + HQ+ L
Sbjct: 606 AIADSLMEPYRKY---LHTYLSLSGPHLGYLYSTNSL-FNSGLWLLKKLKSTQVIHQLTL 661
Query: 499 VEE 507
++
Sbjct: 662 TDD 664
>At5g19520.1 68418.m02325 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 742
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 191 PVPKPQPDPSKLKGCGYRNPMGSE*PSPEGWVRRLSSASS 310
P+ P P+ K G ++ P + PSPEG VRR S + S
Sbjct: 51 PISIPTPEIYKFSGSVHKPP---KIPSPEGLVRRKSLSRS 87
>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
family protein contains similarity to regulatory protein
Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
(6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
Length = 781
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -1
Query: 171 QQISTLSWQSSSPNLTSSTPHPVTLALLTST 79
+ +++LSWQ+S P + + + +ALL ST
Sbjct: 310 EDVTSLSWQTSKPVIVNEKNYTSEMALLGST 340
>At5g41430.1 68418.m05032 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 161
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 179 PITEPVPKPQPDPSKLKGCGYRNPMGSE 262
P+ P+P+PQP P + G+ P+ S+
Sbjct: 61 PLPLPLPQPQPQPQQDNETGHLMPLHSQ 88
>At4g37160.1 68417.m05261 multi-copper oxidase type I family protein
contains Pfam profile: PF00394 Multicopper oxidase
Length = 541
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = -1
Query: 231 PFNFEGSGCGFGTGSVMGLVQQISTLSWQSSSPNLTSSTPHPVTLALLTSTPSLFLL 61
P+ F +GT S +G+ QQ+ ++ Q P + + T + + + L+ FL+
Sbjct: 29 PYMFYTWTVTYGTRSPLGVPQQVILINGQFPGPAIEAVTNNNIVVNLINKLDEPFLI 85
>At3g58050.1 68416.m06471 expressed protein
Length = 1209
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/50 (32%), Positives = 19/50 (38%)
Frame = -1
Query: 255 PMGFL*PHPFNFEGSGCGFGTGSVMGLVQQISTLSWQSSSPNLTSSTPHP 106
P G + PH F T S MG Q +SW + N PHP
Sbjct: 1019 PQGGMFPHLLTQNLQYPVFQTASPMGYFHQAPPVSWPTGPANGLIPFPHP 1068
>At3g51650.1 68416.m05664 expressed protein
Length = 826
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 707 RTKRGSFPPKPFGRPQVSCWCRKLSPRVPGKARIHVDVLGEVE 579
R+ GS P PF P + W +K+ G + V GEVE
Sbjct: 775 RSPTGSGPDNPFEHPSPNHWLKKVKSSGDGTGK-QVLAAGEVE 816
>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycsimilar to extensin-like protein [Lycopersicon
esculentum] gi|5917664|gb|AAD55979; contains
leucine-rich repeats, Pfam:PF00560; contains proline
rich extensin domains, INTERPRO:IPR002965
Length = 470
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 450 MGHPDHQGNAGPPSETRRGKIIHEDFNTKSSRT 548
+ + D QG+ PPS + GK +HE T S T
Sbjct: 224 LANNDLQGSCVPPSFYKMGKTLHEIIITNSQLT 256
>At3g08510.1 68416.m00988 phosphoinositide-specific phospholipase C
(PLC2) identical to phosphoinositide specific
phospholipase C(AtPLC2) GI:857374 [Arabidopsis thaliana]
Length = 581
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -3
Query: 316 PRGTRRTEPPYPPLR*WSLRPHGVPVAASLQLRGVRLRLW 197
P+GTR T Y PL WS HG + A ++G LW
Sbjct: 376 PKGTRVTSSNYNPLVGWS---HGAQMVA-FNMQGYGRSLW 411
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,326,059
Number of Sequences: 28952
Number of extensions: 450136
Number of successful extensions: 1565
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1556
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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