Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30518
         (757 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         25   0.65 
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   3.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   6.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.0  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 455 INSKNLPRRRSSRRAQGKKEIQQATTKKSFEVMIKRDIKHKP 580
           +NSK+LPR+ S  R +  +   +   K   E   +R+  ++P
Sbjct: 194 LNSKSLPRQYSQSRGRHNQSRSKRQPKTGREDQTRRNPYYRP 235


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -3

Query: 644 GKHDCRPNFYFSPFRTHSYEQPV-CA*C 564
           GK   RP+   +  RTHS E+P  C  C
Sbjct: 256 GKSYARPSTLKTHLRTHSGEKPYRCIDC 283


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -3

Query: 623 NFYFSPFRTHSYEQPVCA 570
           N  F PFR   Y Q V A
Sbjct: 79  NLVFPPFRAEDYRQEVHA 96


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 312  WWSIGSRRRTASSRIIGQT*ITTFSVSAR*NWNSQ 416
            WW+  + RRT ++R    T  +T +     NW +Q
Sbjct: 1051 WWTTTTTRRTTTTR---PTTTSTTTRPTTTNWPTQ 1082


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,438
Number of Sequences: 336
Number of extensions: 3483
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)