Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30518
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    29   0.54 
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    28   1.7  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.9  
SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce...    27   2.9  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    27   3.8  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    26   6.7  
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c...    26   6.7  

>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 340 VLRREPILHQHQGR-HIRRMSLHLDLQILPNVQCLVVDGFLVSISAGV 200
           +L + P LH    R  IR +S H+D +IL  +    + GF+  +S G+
Sbjct: 450 LLEKNPTLHLSLNRLSIRNISRHIDPKILAMLGRQAIRGFMDDVSKGL 497


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 71  SECSMCSPLDSGKMPPWILLHSL 3
           SE +MC PL  G  P W L+  L
Sbjct: 268 SEMAMCYPLMQGHQPEWALVRGL 290


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 461 SKNLPRRRSSRRAQGKKEIQQATTKKSFEVMIKRDIKHK 577
           + NL   +   +    K ++  TTK+S E +   D KH+
Sbjct: 241 ASNLQEIKKGTKEYSLKSLEMTTTKESNETLCSNDSKHR 279


>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 436 LPKEIVNQLKKSPKTPKQSPRARKERDS 519
           LP+++ N +KK+    K   R RK++DS
Sbjct: 84  LPEDLYNLIKKAVSVRKHLERNRKDKDS 111


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 421 VDYDWLPKEIVNQLKKSPKTPKQSP 495
           VD  WLPK  ++ LKKS     ++P
Sbjct: 374 VDQLWLPKRSLSALKKSSSLTSENP 398


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 464 KNLPRRRSSRRAQGKKEIQQATTKKS 541
           KNLPR + S   Q K+  Q  +++KS
Sbjct: 95  KNLPRNQKSNEIQEKQTFQTPSSEKS 120


>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +2

Query: 191 NYRDASGNAYQEAVYNQTLNIGKYLKV*MERHSSYMSSLVLVEYWLSSQDSKLSHH 358
           N R+AS N Y     N  +NI + L +     S+ +S  +   Y + S  S  S H
Sbjct: 184 NTREASNNTYLYGFSNNFINISRTLNLRYPSASASISDSLPPPYQVLSVPSVTSTH 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,787
Number of Sequences: 5004
Number of extensions: 58606
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)