Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30518
         (757 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0665 + 19688278-19688462,19688679-19688842,19688949-196891...    32   0.57 
03_03_0214 + 15487367-15487388,15488220-15488375,15488690-154889...    30   1.7  
03_06_0342 + 33268971-33270533                                         29   5.3  
11_05_0087 + 18970741-18972702                                         28   9.2  

>10_08_0665 +
           19688278-19688462,19688679-19688842,19688949-19689112,
           19689249-19689502,19690064-19690175
          Length = 292

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
 Frame = -1

Query: 382 NVVIYVWPMMRELAVLRREPILHQHQG-RHIRRMSLHLD-LQILPNVQCLVVDGFLVSIS 209
           NVV++   +++++  L  + ++H+HQG R +  + LH   + +L N+  LV+ G  +   
Sbjct: 54  NVVVFAVAILQKMGALVWDKVVHEHQGWRLVTCIWLHAGVVHLLANMLSLVLIGLRLEQQ 113

Query: 208 AGVSVIK-LYI*SERSS---SKSFIRYK-GIGKGGFLFWL 104
            G   I  +Y+ S       S  FIR    +G  G LF L
Sbjct: 114 FGYMRIGIIYLVSGIGGSVLSSLFIRNSISVGASGALFGL 153


>03_03_0214 +
           15487367-15487388,15488220-15488375,15488690-15488925,
           15489013-15489132,15490466-15490480
          Length = 182

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 386 CLSPLKLEQPVK*TMTGYLKKL*INSKNLPRRRSSRRAQGKKEIQQATTKKS 541
           C + + +++P        LKK    ++NL R RS     G +  +Q+TTKK+
Sbjct: 86  CAARVDVQEPNVSLTNASLKKKEFRTRNLKRNRSWTDKNGTRRKKQSTTKKT 137


>03_06_0342 + 33268971-33270533
          Length = 520

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 23/102 (22%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
 Frame = -1

Query: 436 ASHSLLHWLFQFQRAETLNVVIYVWPMM-RELAVLRREPILHQHQGRHIRRMSLHLDLQI 260
           +S SLL+ L        L+++  +W ++ + L  L+ + ++ +H  RH RR++  +D  +
Sbjct: 6   SSSSLLNGL---NSGVVLSLIAVLWTVVWQNLQRLQLQTLVGRHMNRHARRLAALVDPYL 62

Query: 259 LPNVQCLVVDGFLVSISAGVSVIKLYI*SERSSSKSFIRYKG 134
             +V     +G  +  SA    +K Y+ +  +     +R +G
Sbjct: 63  --SVTIHEYEGGRMKRSAAYEEVKAYLSASSARDVRHLRAEG 102


>11_05_0087 + 18970741-18972702
          Length = 653

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -1

Query: 355 MRELAVLRREPILHQHQGRHIRRMSLHLDLQILPNVQCLVVDGFL 221
           +R+  V      L    G H+RR+++H++ + LP VQ L  D FL
Sbjct: 156 LRDAFVRSAHAALAAAAGGHVRRLTMHVETERLP-VQ-LTADAFL 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,039,232
Number of Sequences: 37544
Number of extensions: 362834
Number of successful extensions: 880
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)