Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30518
         (757 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)                  113   1e-25
SB_55836| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_53086| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_15723| Best HMM Match : DUF1639 (HMM E-Value=1.7)                   28   9.4  

>SB_3675| Best HMM Match : TRAP_alpha (HMM E-Value=0)
          Length = 667

 Score =  113 bits (272), Expect = 1e-25
 Identities = 46/83 (55%), Positives = 64/83 (77%)
 Frame = +2

Query: 5   DYVVESMEASFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNV 184
           D++V+ MEAS RYP DY+YYIQNFTA  YN  VKP  +A+F Y+F P+E+F GRPFGL++
Sbjct: 179 DFMVDMMEASLRYPQDYSYYIQNFTAFQYNTVVKPGHQASFEYAFRPHESFGGRPFGLSI 238

Query: 185 QLNYRDASGNAYQEAVYNQTLNI 253
            L Y+D  G  Y++AV+N+T+ +
Sbjct: 239 NLLYKDTDGKMYRDAVFNETVQL 261



 Score = 37.1 bits (82), Expect = 0.015
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
 Frame = +1

Query: 256 EVSEGLDGETFFLYVFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETGTA--SEVDY 429
           E  EG+DGETFFLY+F                                E GT    ++DY
Sbjct: 263 ESDEGMDGETFFLYLF-IAAIALLLVMAAHYGLTSIKAFKKSSSKAPIEMGTQQDGDIDY 321

Query: 430 DWLPKEIVNQLKKS 471
           +WLPKE   + + +
Sbjct: 322 EWLPKETTTEFENT 335


>SB_55836| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 400 ETGTASEVDYDWLPKEIVNQ--LKKSPKTPKQSPRARKERDS 519
           ET T  + +    P E +N   +K SP+ PK SP+  K  DS
Sbjct: 63  ETTTEGKSEIVPSPSEAMNATFIKNSPEVPKSSPKQTKNSDS 104


>SB_53086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 667

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 79  GEVLNVVCVVHWIAERCLH 23
           G  L V+C   W+ ERCLH
Sbjct: 142 GFTLQVICSQEWVRERCLH 160


>SB_15723| Best HMM Match : DUF1639 (HMM E-Value=1.7)
          Length = 153

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +1

Query: 430 DWLPKEIVNQ---LKKSPKTPKQSPRARKERDSA 522
           DWL K+  NQ    +K+PK PK    A++ R S+
Sbjct: 61  DWLSKKPKNQDIRTRKTPKPPKTPSTAKRARPSS 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,242,160
Number of Sequences: 59808
Number of extensions: 421799
Number of successful extensions: 1079
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)