Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30518
(757 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR456961-1|CAG33242.1| 286|Homo sapiens SSR1 protein. 123 6e-28
BT007387-1|AAP36051.1| 286|Homo sapiens signal sequence recepto... 123 6e-28
BC007710-1|AAH07710.1| 286|Homo sapiens signal sequence recepto... 123 6e-28
AL139095-1|CAI16444.1| 286|Homo sapiens signal sequence recepto... 123 6e-28
AK222809-1|BAD96529.1| 286|Homo sapiens signal sequence recepto... 123 6e-28
AK222762-1|BAD96482.1| 286|Homo sapiens signal sequence recepto... 123 6e-28
AK075562-1|BAC11701.1| 259|Homo sapiens protein ( Homo sapiens ... 123 6e-28
AF156965-1|AAD48778.1| 286|Homo sapiens translocon-associated p... 123 6e-28
Z12830-1|CAA78290.1| 286|Homo sapiens SSR alpha subunit protein. 121 2e-27
>CR456961-1|CAG33242.1| 286|Homo sapiens SSR1 protein.
Length = 286
Score = 123 bits (297), Expect = 6e-28
Identities = 51/83 (61%), Positives = 67/83 (80%)
Frame = +2
Query: 5 DYVVESMEASFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNV 184
D++VES++ASFRYP DY +YIQNFTALP N V P+++ATF YSFIP E GRPFGL +
Sbjct: 114 DFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVI 173
Query: 185 QLNYRDASGNAYQEAVYNQTLNI 253
LNY+D +GN +Q+AV+NQT+ +
Sbjct: 174 NLNYKDLNGNVFQDAVFNQTVTV 196
Score = 46.4 bits (105), Expect = 1e-04
Identities = 26/92 (28%), Positives = 42/92 (45%)
Frame = +1
Query: 256 EVSEGLDGETFFLYVFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETGTASEVDYDW 435
E +GLDGET F+Y+F T + ++VD W
Sbjct: 198 EREDGLDGETIFMYMFLAGLGLLVIVGLHQLLESRKRKRPIQKVEMG--TSSQNDVDMSW 255
Query: 436 LPKEIVNQLKKSPKTPKQSPRARKERDSAGDD 531
+P+E +NQ+ K+ +P++ PR R ++ S G D
Sbjct: 256 IPQETLNQINKA--SPRRLPRKRAQKRSVGSD 285
>BT007387-1|AAP36051.1| 286|Homo sapiens signal sequence receptor,
alpha (translocon-associated protein alpha) protein.
Length = 286
Score = 123 bits (297), Expect = 6e-28
Identities = 51/83 (61%), Positives = 67/83 (80%)
Frame = +2
Query: 5 DYVVESMEASFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNV 184
D++VES++ASFRYP DY +YIQNFTALP N V P+++ATF YSFIP E GRPFGL +
Sbjct: 114 DFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVI 173
Query: 185 QLNYRDASGNAYQEAVYNQTLNI 253
LNY+D +GN +Q+AV+NQT+ +
Sbjct: 174 NLNYKDLNGNVFQDAVFNQTVTV 196
Score = 46.4 bits (105), Expect = 1e-04
Identities = 26/92 (28%), Positives = 42/92 (45%)
Frame = +1
Query: 256 EVSEGLDGETFFLYVFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETGTASEVDYDW 435
E +GLDGET F+Y+F T + ++VD W
Sbjct: 198 EREDGLDGETIFMYMFLAGLGLLVIVGLHQLLESRKRKRPIQKVEMG--TSSQNDVDMSW 255
Query: 436 LPKEIVNQLKKSPKTPKQSPRARKERDSAGDD 531
+P+E +NQ+ K+ +P++ PR R ++ S G D
Sbjct: 256 IPQETLNQINKA--SPRRLPRKRAQKRSVGSD 285
>BC007710-1|AAH07710.1| 286|Homo sapiens signal sequence receptor,
alpha (translocon-associated protein alpha) protein.
Length = 286
Score = 123 bits (297), Expect = 6e-28
Identities = 51/83 (61%), Positives = 67/83 (80%)
Frame = +2
Query: 5 DYVVESMEASFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNV 184
D++VES++ASFRYP DY +YIQNFTALP N V P+++ATF YSFIP E GRPFGL +
Sbjct: 114 DFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVI 173
Query: 185 QLNYRDASGNAYQEAVYNQTLNI 253
LNY+D +GN +Q+AV+NQT+ +
Sbjct: 174 NLNYKDLNGNVFQDAVFNQTVTV 196
Score = 46.4 bits (105), Expect = 1e-04
Identities = 26/92 (28%), Positives = 42/92 (45%)
Frame = +1
Query: 256 EVSEGLDGETFFLYVFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETGTASEVDYDW 435
E +GLDGET F+Y+F T + ++VD W
Sbjct: 198 EREDGLDGETIFMYMFLAGLGLLVIVGLHQLLESRKRKRPIQKVEMG--TSSQNDVDMSW 255
Query: 436 LPKEIVNQLKKSPKTPKQSPRARKERDSAGDD 531
+P+E +NQ+ K+ +P++ PR R ++ S G D
Sbjct: 256 IPQETLNQINKA--SPRRLPRKRAQKRSVGSD 285
>AL139095-1|CAI16444.1| 286|Homo sapiens signal sequence receptor,
alpha (translocon-associated protein alpha) protein.
Length = 286
Score = 123 bits (297), Expect = 6e-28
Identities = 51/83 (61%), Positives = 67/83 (80%)
Frame = +2
Query: 5 DYVVESMEASFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNV 184
D++VES++ASFRYP DY +YIQNFTALP N V P+++ATF YSFIP E GRPFGL +
Sbjct: 114 DFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVI 173
Query: 185 QLNYRDASGNAYQEAVYNQTLNI 253
LNY+D +GN +Q+AV+NQT+ +
Sbjct: 174 NLNYKDLNGNVFQDAVFNQTVTV 196
Score = 46.4 bits (105), Expect = 1e-04
Identities = 26/92 (28%), Positives = 42/92 (45%)
Frame = +1
Query: 256 EVSEGLDGETFFLYVFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETGTASEVDYDW 435
E +GLDGET F+Y+F T + ++VD W
Sbjct: 198 EREDGLDGETIFMYMFLAGLGLLVIVGLHQLLESRKRKRPIQKVEMG--TSSQNDVDMSW 255
Query: 436 LPKEIVNQLKKSPKTPKQSPRARKERDSAGDD 531
+P+E +NQ+ K+ +P++ PR R ++ S G D
Sbjct: 256 IPQETLNQINKA--SPRRLPRKRAQKRSVGSD 285
>AK222809-1|BAD96529.1| 286|Homo sapiens signal sequence receptor,
alpha variant protein.
Length = 286
Score = 123 bits (297), Expect = 6e-28
Identities = 51/83 (61%), Positives = 67/83 (80%)
Frame = +2
Query: 5 DYVVESMEASFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNV 184
D++VES++ASFRYP DY +YIQNFTALP N V P+++ATF YSFIP E GRPFGL +
Sbjct: 114 DFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVI 173
Query: 185 QLNYRDASGNAYQEAVYNQTLNI 253
LNY+D +GN +Q+AV+NQT+ +
Sbjct: 174 NLNYKDLNGNVFQDAVFNQTVTV 196
Score = 46.4 bits (105), Expect = 1e-04
Identities = 26/92 (28%), Positives = 42/92 (45%)
Frame = +1
Query: 256 EVSEGLDGETFFLYVFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETGTASEVDYDW 435
E +GLDGET F+Y+F T + ++VD W
Sbjct: 198 EREDGLDGETIFMYMFLAGLGLPVIVGLHQLLESRKRKRPIQKVEMG--TSSQNDVDMSW 255
Query: 436 LPKEIVNQLKKSPKTPKQSPRARKERDSAGDD 531
+P+E +NQ+ K+ +P++ PR R ++ S G D
Sbjct: 256 IPQETLNQINKA--SPRRLPRKRAQKRSVGSD 285
>AK222762-1|BAD96482.1| 286|Homo sapiens signal sequence receptor,
alpha variant protein.
Length = 286
Score = 123 bits (297), Expect = 6e-28
Identities = 51/83 (61%), Positives = 67/83 (80%)
Frame = +2
Query: 5 DYVVESMEASFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNV 184
D++VES++ASFRYP DY +YIQNFTALP N V P+++ATF YSFIP E GRPFGL +
Sbjct: 114 DFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVI 173
Query: 185 QLNYRDASGNAYQEAVYNQTLNI 253
LNY+D +GN +Q+AV+NQT+ +
Sbjct: 174 NLNYKDLNGNVFQDAVFNQTVTV 196
Score = 46.4 bits (105), Expect = 1e-04
Identities = 26/92 (28%), Positives = 42/92 (45%)
Frame = +1
Query: 256 EVSEGLDGETFFLYVFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETGTASEVDYDW 435
E +GLDGET F+Y+F T + ++VD W
Sbjct: 198 EREDGLDGETIFMYMFLAGLGLLVIVGLHQLLESRKRKRPIQKVEMG--TSSQNDVDMSW 255
Query: 436 LPKEIVNQLKKSPKTPKQSPRARKERDSAGDD 531
+P+E +NQ+ K+ +P++ PR R ++ S G D
Sbjct: 256 IPQETLNQINKA--SPRRLPRKRAQKRSVGSD 285
>AK075562-1|BAC11701.1| 259|Homo sapiens protein ( Homo sapiens
cDNA PSEC0262 fis, clone NT2RP3004505, highly similar to
TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT PRECURSOR.
).
Length = 259
Score = 123 bits (297), Expect = 6e-28
Identities = 51/83 (61%), Positives = 67/83 (80%)
Frame = +2
Query: 5 DYVVESMEASFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNV 184
D++VES++ASFRYP DY +YIQNFTALP N V P+++ATF YSFIP E GRPFGL +
Sbjct: 87 DFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVI 146
Query: 185 QLNYRDASGNAYQEAVYNQTLNI 253
LNY+D +GN +Q+AV+NQT+ +
Sbjct: 147 NLNYKDLNGNVFQDAVFNQTVTV 169
Score = 46.4 bits (105), Expect = 1e-04
Identities = 26/92 (28%), Positives = 42/92 (45%)
Frame = +1
Query: 256 EVSEGLDGETFFLYVFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETGTASEVDYDW 435
E +GLDGET F+Y+F T + ++VD W
Sbjct: 171 EREDGLDGETIFMYMFLAGLGLLVIVGLHQLLESRKRKRPIQKVEMG--TSSQNDVDMSW 228
Query: 436 LPKEIVNQLKKSPKTPKQSPRARKERDSAGDD 531
+P+E +NQ+ K+ +P++ PR R ++ S G D
Sbjct: 229 IPQETLNQINKA--SPRRLPRKRAQKRSVGSD 258
>AF156965-1|AAD48778.1| 286|Homo sapiens translocon-associated
protein alpha subunit protein.
Length = 286
Score = 123 bits (297), Expect = 6e-28
Identities = 51/83 (61%), Positives = 67/83 (80%)
Frame = +2
Query: 5 DYVVESMEASFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNV 184
D++VES++ASFRYP DY +YIQNFTALP N V P+++ATF YSFIP E GRPFGL +
Sbjct: 114 DFIVESLDASFRYPQDYQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVI 173
Query: 185 QLNYRDASGNAYQEAVYNQTLNI 253
LNY+D +GN +Q+AV+NQT+ +
Sbjct: 174 NLNYKDLNGNVFQDAVFNQTVTV 196
Score = 46.4 bits (105), Expect = 1e-04
Identities = 26/92 (28%), Positives = 42/92 (45%)
Frame = +1
Query: 256 EVSEGLDGETFFLYVFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETGTASEVDYDW 435
E +GLDGET F+Y+F T + ++VD W
Sbjct: 198 EREDGLDGETIFMYMFLAGLGLLVIVGLHQLLESRKRKRPIQKVEMG--TSSQNDVDMSW 255
Query: 436 LPKEIVNQLKKSPKTPKQSPRARKERDSAGDD 531
+P+E +NQ+ K+ +P++ PR R ++ S G D
Sbjct: 256 IPQETLNQINKA--SPRRLPRKRAQKRSVGSD 285
>Z12830-1|CAA78290.1| 286|Homo sapiens SSR alpha subunit protein.
Length = 286
Score = 121 bits (292), Expect = 2e-27
Identities = 50/83 (60%), Positives = 67/83 (80%)
Frame = +2
Query: 5 DYVVESMEASFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNV 184
D++VES++ASFRYP D+ +YIQNFTALP N V P+++ATF YSFIP E GRPFGL +
Sbjct: 114 DFIVESLDASFRYPQDHQFYIQNFTALPLNTVVPPQRQATFEYSFIPAEPMGGRPFGLVI 173
Query: 185 QLNYRDASGNAYQEAVYNQTLNI 253
LNY+D +GN +Q+AV+NQT+ +
Sbjct: 174 NLNYKDLNGNVFQDAVFNQTVTV 196
Score = 46.4 bits (105), Expect = 1e-04
Identities = 26/92 (28%), Positives = 42/92 (45%)
Frame = +1
Query: 256 EVSEGLDGETFFLYVFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETGTASEVDYDW 435
E +GLDGET F+Y+F T + ++VD W
Sbjct: 198 EREDGLDGETIFMYMFLAGLGLLVIVGLHQLLESRKRKRPIQKVEMG--TSSQNDVDMSW 255
Query: 436 LPKEIVNQLKKSPKTPKQSPRARKERDSAGDD 531
+P+E +NQ+ K+ +P++ PR R ++ S G D
Sbjct: 256 IPQETLNQINKA--SPRRLPRKRAQKRSVGSD 285
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,619,174
Number of Sequences: 237096
Number of extensions: 2105155
Number of successful extensions: 4105
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4096
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9127122082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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