Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30518
         (757 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical ...   103   1e-22
AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical...    30   1.5  
Z70034-11|CAA93853.2|  364|Caenorhabditis elegans Hypothetical p...    28   8.2  
Z68337-6|CAA92752.1|  170|Caenorhabditis elegans Hypothetical pr...    28   8.2  
Z68317-1|CAA92686.1|  214|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AB000919-1|BAA22597.1|  214|Caenorhabditis elegans VHA-4 protein.      28   8.2  

>AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical
           protein Y71F9AM.6 protein.
          Length = 257

 Score =  103 bits (248), Expect = 1e-22
 Identities = 45/83 (54%), Positives = 59/83 (71%)
 Frame = +2

Query: 5   DYVVESMEASFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNV 184
           D+VV+  E SFR+P D++Y++QNFT   YNR V PK+E T  Y F  +E FAGRP GL V
Sbjct: 86  DFVVKYAETSFRFPTDHSYHLQNFTRGEYNRRVAPKEEVTLDYGFYAHETFAGRPVGLVV 145

Query: 185 QLNYRDASGNAYQEAVYNQTLNI 253
            ++Y+DA GN +   VYNQT+NI
Sbjct: 146 NVHYQDADGNVFVNNVYNQTINI 168



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
 Frame = +1

Query: 256 EVSEGLDGETFFLYVFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETGTASEVDYDW 435
           E   G  GET FL++F                                E GT+SEVD++W
Sbjct: 170 EDDSGFSGETGFLFIFFVALSIGGLYLSNQFLSKLSRKSGLSKRRVV-EQGTSSEVDFEW 228

Query: 436 LPKEIV-NQLKKSPKTPKQSPRARKERDSA 522
           +P++ V N+ K+SP T   SP+ARK    A
Sbjct: 229 IPRDAVKNKEKRSPAT--VSPKARKSAKKA 256


>AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical
            protein W03F11.4 protein.
          Length = 1406

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 461  SKNLPRRRSSRRAQGKKEIQQATTKKSFEVMI 556
            S++ PRR   RR   KK++++   KKSF VM+
Sbjct: 1376 SEDRPRRGDKRRGAAKKDVKE-EDKKSFSVMV 1406


>Z70034-11|CAA93853.2|  364|Caenorhabditis elegans Hypothetical
           protein C18E9.2a protein.
          Length = 364

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 433 WLPKEIVNQLKKSPKTPKQSPRARKERDSAGDD*E 537
           W   E V   KK  K  K+  +++KE+DS  ++ E
Sbjct: 273 WYTYEYVGDEKKEAKKDKKDKKSKKEKDSDAEEEE 307


>Z68337-6|CAA92752.1|  170|Caenorhabditis elegans Hypothetical
           protein M7.9 protein.
          Length = 170

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 757 KKNPMPRKP*FGYQPKSVRNYSKKSKY*TYLILKN 653
           KK  +P+K  F + P  +RN +K+ K   Y I  N
Sbjct: 26  KKGGLPKKVHFSFGPAYLRNLTKEEKQQYYAIFGN 60


>Z68317-1|CAA92686.1|  214|Caenorhabditis elegans Hypothetical
           protein T01H3.1 protein.
          Length = 214

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 667 NRFNI-WIFWNNS*HFWAGIQIRVSLAL 747
           +RF+I W   + S H WAG+ I  SL+L
Sbjct: 35  HRFDIGWFLTSTSPHMWAGLGIGFSLSL 62


>AB000919-1|BAA22597.1|  214|Caenorhabditis elegans VHA-4 protein.
          Length = 214

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 667 NRFNI-WIFWNNS*HFWAGIQIRVSLAL 747
           +RF+I W   + S H WAG+ I  SL+L
Sbjct: 35  HRFDIGWFLTSTSPHMWAGLGIGFSLSL 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,607,603
Number of Sequences: 27780
Number of extensions: 326920
Number of successful extensions: 954
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)