Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30518
         (757 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21160.1 68415.m02510 translocon-associated protein alpha (TR...    42   6e-04
At5g02010.1 68418.m00120 expressed protein contains Pfam profile...    28   7.7  

>At2g21160.1 68415.m02510 translocon-associated protein alpha (TRAP
           alpha) family protein contains Pfam profile: PF03896
           translocon-associated protein (TRAP), alpha subunit
          Length = 258

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +2

Query: 14  VESMEASFRYPMDYTYYIQNFTALPYNREVKPKQ-EATFAYSFIPNEAFAGRPFGLNVQL 190
           V  + AS   P D+   +QN T L  N    P   +ATF Y F  ++      F L   +
Sbjct: 100 VMGIRASVHLPYDHKLLVQNLTMLRLNNASIPTSLQATFPYIFAVSQYLQPGAFDLVGYI 159

Query: 191 NYRDASGNAYQEAVYNQTLNI 253
            Y D  G  YQ   YN T+ +
Sbjct: 160 IY-DVEGKPYQSVFYNGTIEV 179


>At5g02010.1 68418.m00120 expressed protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 546

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 416 VK*TMTGYLKKL*INSKNLPRRRSSRRAQGKKEIQQATTKKSFEV 550
           VK  +T Y+ K     KNLP  RSSR +  ++   +   K+S  V
Sbjct: 495 VKRVLTAYVTKNEPRLKNLPLERSSRSSSSERLSLEKCMKESLNV 539


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,725,572
Number of Sequences: 28952
Number of extensions: 304683
Number of successful extensions: 767
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)